View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_486 (Length: 230)
Name: NF9288A_low_486
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_486 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 49165389 - 49165610
Alignment:
| Q |
7 |
gttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctannnnnnnatgactcacgattgacaacacta |
106 |
Q |
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| T |
49165389 |
gttctaccatacactatttaatacaaaatgttgtttagtggcactacaatgcagcttgaataatcctctatttttttatgactcacgattgacaacacta |
49165488 |
T |
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| Q |
107 |
gaatcaagnnnnnnnnntgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaag |
206 |
Q |
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| T |
49165489 |
gaatcaagaaaaaaa--tgcaactattgtagttttacaaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaag |
49165586 |
T |
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| Q |
207 |
gaaactcaaagaaactcactgcag |
230 |
Q |
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| T |
49165587 |
gaaactcaaagaaactcactgcag |
49165610 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 43751932 - 43752004
Alignment:
| Q |
144 |
aaatagacatagcttatttgtaaattgattatatacttttgttggcatacctcaggaacgaaggaaactcaaa |
216 |
Q |
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| T |
43751932 |
aaatagatgtagcttatttgtaaattgtttttttgcttttgttggcatactataggaaagaaggcaactcaaa |
43752004 |
T |
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