View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_488 (Length: 230)
Name: NF9288A_low_488
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_488 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 32534181 - 32534406
Alignment:
| Q |
5 |
caactaatgcacgagatgaccctcacagaagtaaaagcaggcgcgtggtgagaaatgaagtctaaaggcttgagttaacattcattaaccaacagggact |
104 |
Q |
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| T |
32534181 |
caactaatgcacgagatgaccctcacagaagtaagagcaagcgcgtggtgagaaatgaagtctaaaggcttgagttaacattcattaaccaacagggact |
32534280 |
T |
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| Q |
105 |
agtaaccctcgcaaataagggcatgactaacagcctagaaaatccaaaatagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
204 |
Q |
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| T |
32534281 |
agtaaccctcacaaataagggcatgactaacagcctagacactccaaaacagctagcaaatattatattggatccttctaacctacacaattcaatcatg |
32534380 |
T |
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| Q |
205 |
cttgaatttcagtatcaatagtactg |
230 |
Q |
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| T |
32534381 |
cttgaatttcagtatcaatagtactg |
32534406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 32549445 - 32549491
Alignment:
| Q |
57 |
aaatgaagtctaaaggcttgagttaacattcattaaccaacagggac |
103 |
Q |
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| T |
32549445 |
aaatgaaatctaaagacttgagttaacattcattagccaacaaggac |
32549491 |
T |
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