View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_49 (Length: 416)
Name: NF9288A_low_49
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 19821990 - 19822395
Alignment:
| Q |
7 |
acaacaacaaagataagtatttttcttcccccttttctctcnnnnnnnccaatcctctgctaaactttgtgtgaaatgcaaaataaaacattgataaaac |
106 |
Q |
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| T |
19821990 |
acaacaacaaagataagtatttttcttcccccttttctctctttttttccaatcctctgctaaactttgtgtgaaatgcaaaataaaacattgataaaac |
19822089 |
T |
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| Q |
107 |
taaaaggctgattcaaactaaaaggatatttggatgaggttttattagctatggattaatttgaaaagcattatttggtttctactttttcctacactct |
206 |
Q |
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| T |
19822090 |
taaaaggctgattcaaactaaaagaatatttggatgaggttttattagctatgtattaatttgaaaagcattatttggtttctactttttcctacactct |
19822189 |
T |
|
| Q |
207 |
cttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcaagggtaatacaattctgaaccgtttatttatttcannnnnnnnatta |
306 |
Q |
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| T |
19822190 |
cttttaaaatttgaaaaaaccgttatagcaatgaggggatatccatgattgcatgggtaatacaattctaaaccgtttatttatttcattttttttatta |
19822289 |
T |
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| Q |
307 |
taagaacatacgtgtgtacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgatttgtgttaatattgt |
406 |
Q |
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| T |
19822290 |
taagaacatacgtgtttacttcaattaattttataaatagtgactttgatgtgtaaaatatgcttttgattaatttttgtctgatttgtgttaattttgg |
19822389 |
T |
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| Q |
407 |
tcgaca |
412 |
Q |
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|||||| |
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| T |
19822390 |
tcgaca |
19822395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 19897185 - 19897227
Alignment:
| Q |
5 |
caacaacaacaaagataagtatttttcttcccccttttctctc |
47 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
19897185 |
caacaataacaaagacaagtatttttcttcccccttttctctc |
19897227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 2972999 - 2973043
Alignment:
| Q |
139 |
gatgaggttttattagctatggattaatttgaaaagcattatttg |
183 |
Q |
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|||| |||||| | ||||||||| ||||||||||||||||||||| |
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| T |
2972999 |
gatggggttttctcagctatggactaatttgaaaagcattatttg |
2973043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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