View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_503 (Length: 229)

Name: NF9288A_low_503
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_503
NF9288A_low_503
[»] chr6 (15 HSPs)
chr6 (1-136)||(13703968-13704103)
chr6 (185-229)||(13706266-13706310)
chr6 (185-229)||(13713757-13713801)
chr6 (48-168)||(13707946-13708066)
chr6 (48-168)||(13715437-13715557)
chr6 (48-168)||(13710033-13710154)
chr6 (48-168)||(13712121-13712242)
chr6 (48-168)||(13717524-13717645)
chr6 (88-145)||(32938956-32939013)
chr6 (21-133)||(3842022-3842134)
chr6 (88-132)||(33489504-33489548)
chr6 (88-131)||(16436854-16436897)
chr6 (91-151)||(4577930-4577989)
chr6 (91-132)||(20718192-20718233)
chr6 (91-128)||(34673159-34673196)
[»] chr5 (14 HSPs)
chr5 (91-151)||(17018533-17018593)
chr5 (93-132)||(7146251-7146290)
chr5 (91-132)||(14052151-14052192)
chr5 (91-132)||(23085196-23085237)
chr5 (91-151)||(2344143-2344203)
chr5 (91-131)||(43398198-43398238)
chr5 (91-145)||(34303674-34303728)
chr5 (88-145)||(4460581-4460638)
chr5 (91-132)||(5856343-5856384)
chr5 (91-132)||(18282728-18282769)
chr5 (91-132)||(32736640-32736681)
chr5 (91-132)||(35588493-35588534)
chr5 (88-128)||(14000755-14000795)
chr5 (88-132)||(42503852-42503896)
[»] chr1 (5 HSPs)
chr1 (79-151)||(27506634-27506708)
chr1 (91-132)||(4790325-4790366)
chr1 (88-132)||(27322881-27322925)
chr1 (91-132)||(5257173-5257214)
chr1 (91-132)||(10427603-10427644)
[»] chr2 (11 HSPs)
chr2 (91-145)||(16575533-16575587)
chr2 (91-132)||(26966843-26966884)
chr2 (88-143)||(2189028-2189083)
chr2 (89-128)||(21526317-21526356)
chr2 (90-132)||(44019559-44019601)
chr2 (91-132)||(741199-741240)
chr2 (91-151)||(26751485-26751545)
chr2 (88-151)||(25091651-25091714)
chr2 (91-133)||(35314195-35314237)
chr2 (91-151)||(20170476-20170537)
chr2 (91-136)||(38502340-38502385)
[»] chr7 (10 HSPs)
chr7 (91-132)||(27425589-27425630)
chr7 (91-145)||(28760612-28760666)
chr7 (91-132)||(7814238-7814279)
chr7 (91-128)||(7814329-7814366)
chr7 (91-133)||(39599204-39599246)
chr7 (91-132)||(16840597-16840638)
chr7 (88-133)||(38168390-38168435)
chr7 (88-128)||(29286265-29286305)
chr7 (88-128)||(39617087-39617127)
chr7 (91-127)||(40938629-40938665)
[»] chr3 (3 HSPs)
chr3 (88-132)||(37761286-37761330)
chr3 (185-213)||(17390324-17390352)
chr3 (91-151)||(42097231-42097291)
[»] chr8 (6 HSPs)
chr8 (91-151)||(6235387-6235447)
chr8 (88-132)||(32411173-32411217)
chr8 (91-133)||(11903378-11903420)
chr8 (91-132)||(10794560-10794601)
chr8 (94-131)||(27533500-27533537)
chr8 (91-132)||(34142863-34142904)
[»] chr4 (6 HSPs)
chr4 (91-127)||(36199371-36199407)
chr4 (93-128)||(10214245-10214280)
chr4 (91-129)||(28476996-28477034)
chr4 (91-132)||(6391603-6391644)
chr4 (91-132)||(25359001-25359042)
chr4 (91-128)||(47044616-47044653)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 13704103 - 13703968
Alignment:
Q  1 tttcatataagaatgccgcattgttgatctcattcaaaaatataaaaaatttagatgatattttttacagtattcgtctcatataagaatataagtatag 100  Q
    |||| |||||||||||| |||||||||| | |||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||| || |||    
T  13704103 tttcctataagaatgccacattgttgatgttattcaaaaatataaaaaatttatattatattttttatagtattcgtctcatataagaatataggtctag 13704004  T
Q  101 tttgttataatatgaaagtacaaaatatctatatct 136  Q
    ||| ||||||||||||||||||||||| ||||||||    
T  13704003 tttattataatatgaaagtacaaaatacctatatct 13703968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 13706310 - 13706266
Alignment:
Q  185 acacatttgacaccttttgcatcaagcttctttctattatcatga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13706310 acacatttgacaccttttgcatcaagcttctttctattatcatga 13706266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 13713801 - 13713757
Alignment:
Q  185 acacatttgacaccttttgcatcaagcttctttctattatcatga 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13713801 acacatttgacaccttttgcatcaagcttctttctattatcatga 13713757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 13708066 - 13707946
Alignment:
Q  48 aatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttact 147  Q
    |||||| || |||||||||| | |||| ||||||| | | || ||||||||| |||||||||||||||||| | |||| || |||| |  |||||||| |    
T  13708066 aatttatattatattttttatactattggtctcattttaaaagataagtataatttgttataatatgaaaggaaaaaaaatatataacaataattttaat 13707967  T
Q  148 caaagttgtcttcataaaaga 168  Q
    |||| ||||||| ||||||||    
T  13707966 caaaattgtcttaataaaaga 13707946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 13715557 - 13715437
Alignment:
Q  48 aatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttact 147  Q
    |||||| || |||||||||| | |||| ||||||| | | || ||||||||| |||||||||||||||||| | |||| || |||| |  |||||||| |    
T  13715557 aatttatattatattttttatactattggtctcattttaaaagataagtataatttgttataatatgaaaggaaaaaaaatatataacaataattttaat 13715458  T
Q  148 caaagttgtcttcataaaaga 168  Q
    |||| ||||||| ||||||||    
T  13715457 caaaattgtcttaataaaaga 13715437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 13710154 - 13710033
Alignment:
Q  48 aatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaa-gtacaaaatatctatatctttaattttac 146  Q
    |||||| || |||||||||| | |||| ||||||| | | || ||||||||| ||||||||||||||||| | | ||||||| |||| |  ||||||||     
T  13710154 aatttatattatattttttatactattggtctcattttaaaagataagtataatttgttataatatgaaaggaaaaaaatatatataacaataattttaa 13710055  T
Q  147 tcaaagttgtcttcataaaaga 168  Q
    ||||| ||||||| ||||||||    
T  13710054 tcaaaattgtcttaataaaaga 13710033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 13712242 - 13712121
Alignment:
Q  48 aatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaa-gtacaaaatatctatatctttaattttac 146  Q
    |||||| || |||||||||| | |||| ||||||| | | || ||||||||| ||||||||||||||||| | | ||||||| |||| |  ||||||||     
T  13712242 aatttatattatattttttatactattggtctcattttaaaagataagtataatttgttataatatgaaaggaaaaaaatatatataacaataattttaa 13712143  T
Q  147 tcaaagttgtcttcataaaaga 168  Q
    ||||| ||||||| ||||||||    
T  13712142 tcaaaattgtcttaataaaaga 13712121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 13717645 - 13717524
Alignment:
Q  48 aatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaa-gtacaaaatatctatatctttaattttac 146  Q
    |||||| || |||||||||| | |||| ||||||| | | || ||||||||| ||||||||||||||||| | | ||||||| |||| |  ||||||||     
T  13717645 aatttatattatattttttatactattggtctcattttaaaagataagtataatttgttataatatgaaaggaaaaaaatatatataacaataattttaa 13717546  T
Q  147 tcaaagttgtcttcataaaaga 168  Q
    ||||| ||||||| ||||||||    
T  13717545 tcaaaattgtcttaataaaaga 13717524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 32938956 - 32939013
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaatttta 145  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||||||    
T  32938956 aatataagtatagtttgttacaatataaaattgcaaaatatctatatctataatttta 32939013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 3842134 - 3842022
Alignment:
Q  21 ttgttgatctcattcaaaaatataaaaaatttagatgatattttttacagtattcgtctcatataagaatataagtatagtttgttataatatgaaagta 120  Q
    |||||||| ||||| |||||||||| |  |||| || ||| || ||| ||| || || ||||  || |||||||||||| |||||||||||||||||||     
T  3842134 ttgttgatgtcattaaaaaatataagatttttatattatagttgttatagtgtttgtgtcattgaaaaatataagtataatttgttataatatgaaagtg 3842035  T
Q  121 caaaatatctata 133  Q
    |||||||| ||||    
T  3842034 caaaatatgtata 3842022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 33489504 - 33489548
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  33489504 aatataagtatagtttgttacaatatgaaagtgcaaaatatctat 33489548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 16436897 - 16436854
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatcta 131  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  16436897 aatataagtatagtttgttgtaatatcaaagtacaaaatatcta 16436854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 4577989 - 4577930
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    ||||||||| ||||||| ||||| |||| ||||||||||||||||| |||||||| |||||    
T  4577989 ataagtataatttgttagaatat-aaagaacaaaatatctatatctataattttaatcaaa 4577930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 20718233 - 20718192
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||| |||||||||||| ||||||||||| ||||||||||||    
T  20718233 ataattatagtttgttacaatatgaaagtgcaaaatatctat 20718192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 34673196 - 34673159
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  34673196 ataagtatagtttgttacaatatgaaagtataaaatat 34673159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 17018533 - 17018593
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||| |||||    
T  17018533 ataagtatagtttgttacaatatgaaagtacaaaatatatctatctataattttaatcaaa 17018593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 7146290 - 7146251
Alignment:
Q  93 aagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7146290 aagtataatttgttataatatgaaagtacaaaatatctat 7146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 14052192 - 14052151
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  14052192 ataattatagtttgttataatatgaaagtgcaaaatatctat 14052151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 23085237 - 23085196
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  23085237 ataagtatagtttgttataacatgaaagtgcaaaatatctat 23085196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 2344203 - 2344143
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    |||||||||||||||||||||||||||||  ||||||| | || || |||||||| |||||    
T  2344203 ataagtatagtttgttataatatgaaagtttaaaatatatctacctataattttaatcaaa 2344143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 43398238 - 43398198
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatcta 131  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  43398238 ataagtatagtttgttacaatatgaaagtgcaaaatatcta 43398198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 34303674 - 34303728
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaatttta 145  Q
    |||||||| |||||||| ||||||||| | ||||||||||||| || ||||||||    
T  34303674 ataagtattgtttgttacaatatgaaaatgcaaaatatctatacctataatttta 34303728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 4460581 - 4460638
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaatttta 145  Q
    |||||||||||||||||||| ||||||||||| || ||||| | || || ||||||||    
T  4460581 aatataagtatagtttgttacaatatgaaagtgcagaatatttgtaactataatttta 4460638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 5856384 - 5856343
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  5856384 ataagtatagtttgttacaatataaaagtgcaaaatatctat 5856343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 18282769 - 18282728
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  18282769 ataagtatagtttcttatattatgaaagtgcaaaatatctat 18282728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 32736640 - 32736681
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  32736640 ataagtatagtttgttacaatatgaaagtgaaaaatatctat 32736681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 35588534 - 35588493
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||| |||||||||||| |||| |||||||||||||||||||    
T  35588534 ataattatagtttgttacaatacgaaagtacaaaatatctat 35588493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 14000795 - 14000755
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    |||||||||||||||||||| | ||||||||| ||||||||    
T  14000795 aatataagtatagtttgttacactatgaaagtgcaaaatat 14000755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 42503852 - 42503896
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||| ||||||||| || ||||||||| |||||||||||    
T  42503852 aatataagtaaagtttgttacaacatgaaagtagaaaatatctat 42503896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 27506634 - 27506708
Alignment:
Q  79 tcatataagaatataagtatag--tttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    |||||||| ||||||||||||   ||||||| |||||||||||| ||||||||||||||| |||||||| |||||    
T  27506634 tcatataaaaatataagtatatgttttgttacaatatgaaagtataaaatatctatatctataattttaatcaaa 27506708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 4790325 - 4790366
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||| |||||||||||||||||||||| ||||||||||||||    
T  4790325 ataaatatagtttgttataatatgaaattacaaaatatctat 4790366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 27322881 - 27322925
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||    
T  27322881 aatataagtatagtttgttataatattaaagtgcaaaatacctat 27322925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 5257173 - 5257214
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||| |||||||||||| ||||||||||| ||||||||||||    
T  5257173 ataaatatagtttgttacaatatgaaagtgcaaaatatctat 5257214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 10427603 - 10427644
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||    
T  10427603 ataagtataatttattacaatatgaaagtacaaaatatctat 10427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 16575533 - 16575587
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaatttta 145  Q
    ||||||||||||||||||||| ||||||||||||||||||||  || ||||||||    
T  16575533 ataagtatagtttgttataatttgaaagtacaaaatatctatccctataatttta 16575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 26966884 - 26966843
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  26966884 ataagtatagtttgttataatatgaaagtataaaatatctat 26966843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 2189083 - 2189028
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattt 143  Q
    ||||||||||||||||||||  |||||||| | |||||||||||||||| ||||||    
T  2189083 aatataagtatagtttgttacgatatgaaaatgcaaaatatctatatctataattt 2189028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 21526356 - 21526317
Alignment:
Q  89 atataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  21526356 atataagtatagtttcttataatatgaaagtacaaaatat 21526317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 44019559 - 44019601
Alignment:
Q  90 tataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  44019559 tataagtatagtttgttacaatatgaaagtgcaaaatatctat 44019601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 741240 - 741199
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  741240 ataagtatagtttgttacaatatgaaagtaaaaaatatctat 741199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 26751545 - 26751485
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    ||||||||| ||||||| ||||||||||| |||||||||||| ||| | |||||| |||||    
T  26751545 ataagtataatttgttacaatatgaaagttcaaaatatctatgtctatgattttaatcaaa 26751485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 25091714 - 25091651
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||| | | |||||||| |||||    
T  25091714 aatataagtatagtttattataatatgaaagtaaaaaatctatatgtttataattttaatcaaa 25091651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 35314195 - 35314237
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctata 133  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||    
T  35314195 ataagtatagtttgttacaatatgaaagtgcaaaatatatata 35314237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 20170537 - 20170476
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatcta-tatctttaattttactcaaa 151  Q
    ||||||||| ||||||| ||||||||| | ||||||||||| ||||| |||||||| |||||    
T  20170537 ataagtataatttgttacaatatgaaaatgcaaaatatctattatctataattttaatcaaa 20170476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 38502340 - 38502385
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatct 136  Q
    ||||||||||||||||| |||||||| || |||||||| |||||||    
T  38502340 ataagtatagtttgttacaatatgaaggtgcaaaatatatatatct 38502385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 27425630 - 27425589
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  27425630 ataagtatagtttgttataatatgaaagtgcaaaatatctat 27425589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 28760612 - 28760666
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaatttta 145  Q
    ||||||||||||||||||||||||||| |  ||||||| ||||||| ||||||||    
T  28760612 ataagtatagtttgttataatatgaaaatgtaaaatatttatatctataatttta 28760666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 7814238 - 7814279
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  7814238 ataagtataatttgttacaatatgaaagtacaaaatatctat 7814279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 7814329 - 7814366
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  7814329 ataagtatagtttgttacaatatgaaagtacaaaatat 7814366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 39599204 - 39599246
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctata 133  Q
    ||||||||||||||||| ||||||||| | |||||||||||||    
T  39599204 ataagtatagtttgttacaatatgaaattgcaaaatatctata 39599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 16840597 - 16840638
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||    
T  16840597 ataagcatagtttgttacaatatgaaagttcaaaatatctat 16840638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 38168390 - 38168435
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctata 133  Q
    |||||||||||||||||||| | ||||||||| |||||||| ||||    
T  38168390 aatataagtatagtttgttacattatgaaagtgcaaaatatttata 38168435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 29286265 - 29286305
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    |||||||||||||||| ||| ||||||||||| ||||||||    
T  29286265 aatataagtatagtttcttaaaatatgaaagtgcaaaatat 29286305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 39617127 - 39617087
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  39617127 aatataagtatagtttgttacaatatgaaagtgaaaaatat 39617087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 40938665 - 40938629
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaata 127  Q
    |||| |||||||||||||||||||||||| |||||||    
T  40938665 ataaatatagtttgttataatatgaaagtgcaaaata 40938629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 37761286 - 37761330
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  37761286 aatataagtatagtttgttacaatatgaaaatacaaaatatctat 37761330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 17390352 - 17390324
Alignment:
Q  185 acacatttgacaccttttgcatcaagctt 213  Q
    |||||||||||||||||||||||||||||    
T  17390352 acacatttgacaccttttgcatcaagctt 17390324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 42097291 - 42097231
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    ||||||||| ||||| ||| ||||||| | ||||||||||||| || |||||||| |||||    
T  42097291 ataagtatattttgtaatactatgaaattgcaaaatatctatacctctaattttaatcaaa 42097231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 6235447 - 6235387
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctatatctttaattttactcaaa 151  Q
    |||||||| |||||||| |||||||| || ||| |||||||||||| |||||||| |||||    
T  6235447 ataagtattgtttgttacaatatgaaggtgcaacatatctatatctataattttaatcaaa 6235387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 32411217 - 32411173
Alignment:
Q  88 aatataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||    
T  32411217 aatataattatagtttgttaaattatgaaagtacaaaatatctat 32411173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 11903378 - 11903420
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctata 133  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||    
T  11903378 ataagtatagtttgttagaatttgaaagtgcaaaatatctata 11903420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 10794601 - 10794560
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  10794601 ataagtataatttgttattatatgaaagtgcaaaatatctat 10794560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 27533537 - 27533500
Alignment:
Q  94 agtatagtttgttataatatgaaagtacaaaatatcta 131  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  27533537 agtatagtttgttacaatataaaagtacaaaatatcta 27533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 34142904 - 34142863
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||||||||||| |||||||||||  |||||||||||    
T  34142904 ataagtatagtttgttacaatatgaaagtgtaaaatatctat 34142863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 36199371 - 36199407
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaata 127  Q
    ||||||||||||||| |||||||||||||||||||||    
T  36199371 ataagtatagtttgtcataatatgaaagtacaaaata 36199407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 128
Target Start/End: Complemental strand, 10214280 - 10214245
Alignment:
Q  93 aagtatagtttgttataatatgaaagtacaaaatat 128  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10214280 aagtatagtttgttataatatgaaagtgcaaaatat 10214245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 28477034 - 28476996
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatc 129  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  28477034 ataagtatagtttgttacaatatgaaagtgcaaaatatc 28476996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 6391644 - 6391603
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||    
T  6391644 ataagtataatttgttacaatatgaaagtgcaaaatatctat 6391603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 25359042 - 25359001
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatatctat 132  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||    
T  25359042 ataagcatagtttgttacaatatgaaagtgcaaaatatctat 25359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 47044653 - 47044616
Alignment:
Q  91 ataagtatagtttgttataatatgaaagtacaaaatat 128  Q
    |||||||||||||||||||||||||||||  |||||||    
T  47044653 ataagtatagtttgttataatatgaaagtgaaaaatat 47044616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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