View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_510 (Length: 229)

Name: NF9288A_low_510
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_510
NF9288A_low_510
[»] chr5 (5 HSPs)
chr5 (15-209)||(29019904-29020096)
chr5 (34-93)||(6394722-6394781)
chr5 (162-205)||(33578162-33578205)
chr5 (162-203)||(6394893-6394934)
chr5 (34-71)||(22215397-22215434)
[»] chr8 (1 HSPs)
chr8 (34-115)||(104774-104855)
[»] chr2 (2 HSPs)
chr2 (34-92)||(18067273-18067331)
chr2 (54-114)||(797546-797605)
[»] chr4 (3 HSPs)
chr4 (46-115)||(21211527-21211595)
chr4 (34-88)||(20798095-20798149)
chr4 (48-92)||(20798130-20798174)
[»] chr3 (1 HSPs)
chr3 (37-114)||(44864606-44864682)
[»] chr1 (3 HSPs)
chr1 (45-92)||(45463603-45463650)
chr1 (34-93)||(45463631-45463690)
chr1 (162-215)||(217406-217459)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 29020096 - 29019904
Alignment:
Q  15 ttttgattacatttagaagttagaactttattttgatggaatgtcattttgattacttctagaactttattttgatgggcaatgacaaagttagttataa 114  Q
    |||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||  ||| |||||||||||||||||    
T  29020096 tttttattacatttagaaattagaacttaattttgatggaatttcattttgattacttctagaacttgattttgatgaacaacgacaaagttagttataa 29019997  T
Q  115 taatcatgtttgttcctctaattttatctacttttcatannnnnnnnagtatttatgtatcttgttggaatctttgtttactttgtacactcttt 209  Q
    ||||||||| ||| ||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29019996 taatcatgtctgtccctctaattttatttacttttcata--ttttttagtatttatgtatcttgttggaatctttgtttactttgtacactcttt 29019904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 6394722 - 6394781
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattacttctagaactttattttgatggg 93  Q
    ||||||||| ||||||||||||||| ||||||||||| | | |||||| |||||||||||    
T  6394722 ttagaacttgattttgatggaatgttattttgattacattttgaacttgattttgatggg 6394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 33578205 - 33578162
Alignment:
Q  162 agtatttatgtatcttgttggaatctttgtttactttgtacact 205  Q
    |||||||||||||||||||||||| | |||||||||||| ||||    
T  33578205 agtatttatgtatcttgttggaatttatgtttactttgtccact 33578162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 6394893 - 6394934
Alignment:
Q  162 agtatttatgtatcttgttggaatctttgtttactttgtaca 203  Q
    ||||||||||||| |||||||||| | |||||||||||||||    
T  6394893 agtatttatgtatgttgttggaatttatgtttactttgtaca 6394934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 22215434 - 22215397
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattact 71  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  22215434 ttagaacttgattttgatggaatgtcattttgactact 22215397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 104774 - 104855
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattacttctagaactttattttgatgggcaatgacaaagttagttataat 115  Q
    ||||||||| |||||| |||||||||||||||||||| | |||||||| ||| |||| || ||||||||||||  |||||||    
T  104774 ttagaacttgattttgctggaatgtcattttgattacatttagaacttgattctgataggaaatgacaaagttgattataat 104855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 18067273 - 18067331
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattacttctagaactttattttgatgg 92  Q
    ||||||||| |||||||||| |||||||||||||||| | |||||||| ||||||||||    
T  18067273 ttagaacttgattttgatgggatgtcattttgattacatttagaacttgattttgatgg 18067331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 797605 - 797546
Alignment:
Q  54 aatgtcattttgattacttctagaactttattttgatgggcaatgacaaagttagttataa 114  Q
    ||||||| ||||||||| | |||||||| ||||||||||| ||||||||||||| ||||||    
T  797605 aatgtcagtttgattacatttagaactt-attttgatgggaaatgacaaagttaattataa 797546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 21211595 - 21211527
Alignment:
Q  46 tttgatggaatgtcattttgattacttctagaactttattttgatgggcaatgacaaagttagttataat 115  Q
    |||||||| ||||| |||||||||||| |||||||| ||||||||||  ||||||||||||| |||||||    
T  21211595 tttgatgggatgtc-ttttgattacttttagaacttcattttgatggaaaatgacaaagttaattataat 21211527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 20798149 - 20798095
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattacttctagaactttattttg 88  Q
    ||||||||| ||||||||||||||| ||||| ||||| | |||||||| ||||||    
T  20798149 ttagaacttgattttgatggaatgttatttttattacatttagaacttgattttg 20798095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 20798174 - 20798130
Alignment:
Q  48 tgatggaatgtcattttgattacttctagaactttattttgatgg 92  Q
    |||||| |||||||||||| ||||| |||||||| ||||||||||    
T  20798174 tgatgggatgtcattttgagtacttttagaacttgattttgatgg 20798130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 44864682 - 44864606
Alignment:
Q  37 gaactttattttgatggaatgtcattttgattacttctagaactttattttgatgggcaatgacaaagttagttataa 114  Q
    |||||| |||||||||| |||||||||||||||| | |||||| |||||||| |||| | ||||||||||| ||||||    
T  44864682 gaacttgattttgatgggatgtcattttgattacatttagaac-ttattttggtgggaattgacaaagttaattataa 44864606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 45463603 - 45463650
Alignment:
Q  45 ttttgatggaatgtcattttgattacttctagaactttattttgatgg 92  Q
    ||||||||| |||||||||||| ||||| |||||||| ||||||||||    
T  45463603 ttttgatgggatgtcattttgagtacttttagaacttgattttgatgg 45463650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 45463631 - 45463690
Alignment:
Q  34 ttagaactttattttgatggaatgtcattttgattacttctagaactttattttgatggg 93  Q
    ||||||||| ||||||||||||||| ||||| ||||| | |||||||| |||||| ||||    
T  45463631 ttagaacttgattttgatggaatgttattttcattacatttagaacttgattttgttggg 45463690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 217406 - 217459
Alignment:
Q  162 agtatttatgtatcttgttggaatctttgtttactttgtacactctttattagt 215  Q
    ||||||||||||||||||||| || | |||||| |||||| ||| |||||||||    
T  217406 agtatttatgtatcttgttgggatttatgtttagtttgtatactatttattagt 217459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University