View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_514 (Length: 228)
Name: NF9288A_low_514
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_514 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2607347 - 2607568
Alignment:
| Q |
1 |
tatatcttgatttttggtttcgtaaaattttgacaagttaatttttccttccgagcttattgtcattgtcaaaacataaatcttgttgtaggtttccata |
100 |
Q |
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| T |
2607347 |
tatatcttgatttttggtttcgtaaaattttgacaatttaattttttcttccaagctcattgtcattttcaaaacatatatcttgtcgcaggtttccata |
2607446 |
T |
|
| Q |
101 |
tttcttgccttccatttcaatatcagtttttgcgtttgtggtagcaattgcctgcatctggcttccggtacgtgtatcttattggattctgaaaaaacat |
200 |
Q |
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| T |
2607447 |
tttcttgccttccatttcgatatcagcttttgcgtttgtggtagcaattgcctgcatctggcttccggtatgtgtatcttactggattctgaaaaaacat |
2607546 |
T |
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| Q |
201 |
gacattttttatgagtaggaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2607547 |
gacattttttatgagtaggaat |
2607568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 26369832 - 26369704
Alignment:
| Q |
59 |
attgtcattgtcaaaacataaatcttgttgtaggtttccatatttcttgccttccatttcaatatcagtttttgcgtttgtggtagcaattgcctgcatc |
158 |
Q |
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| T |
26369832 |
attgtcattaccaaaacataaatcttattgcaggtttccatatttcttgccttccatttcaatatcagcttttgcgtttgcggtagcaattgcctgcatc |
26369733 |
T |
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| Q |
159 |
tggcttccggtacgtgtatcttattggat |
187 |
Q |
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| T |
26369732 |
tggcttccggtatgtatatcttattggat |
26369704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 26369903 - 26369854
Alignment:
| Q |
3 |
tatcttgatttttggtttcgtaaaattttgacaagttaatttttccttcc |
52 |
Q |
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||||||||||||| ||||| |||||||||||||| ||| ||||| ||||| |
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| T |
26369903 |
tatcttgatttttagtttcataaaattttgacaatttagttttttcttcc |
26369854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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