View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_515 (Length: 228)
Name: NF9288A_low_515
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_515 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 7345297 - 7345420
Alignment:
| Q |
85 |
tttttatcggactattttgatccacggtcgaattccaacttatcaaggtccttttctgcaaataggagggttaacgtaaaataaaaagacaattgttcat |
184 |
Q |
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| T |
7345297 |
tttttatcggactattttgatccacgaccaaactccaaattatcaaggtccttctctgcaaataggagggttaacgtaaaataaaaagacaattgttcat |
7345396 |
T |
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| Q |
185 |
gtcacaagagattactacgaagat |
208 |
Q |
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| T |
7345397 |
gtcacaagagattactacgaagat |
7345420 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 7345038 - 7345112
Alignment:
| Q |
19 |
agacgaattgattgaaagaaagtaggtttgattcttagacgaaacaatttttgatcagattatcattttttatcg |
93 |
Q |
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| T |
7345038 |
agacgaatcgattgaaagaaagtaggtttgattcctagacgaaacaatctttgatcagattatcattttttatcg |
7345112 |
T |
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