View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_526 (Length: 227)
Name: NF9288A_low_526
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_526 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33026196 - 33026416
Alignment:
| Q |
1 |
aagccaatcatctgttgtttggtatgacaaactttccgattcttcgtgttcaccgacttttccaaggaaggaaaaaagtaccaatcttgttgcaaagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026196 |
aagccaatcatctgttgtttggtatgacaaactttctgattcttcgtgttcaccgacttttccaaggaaggaaaaaagtaccaatcttgttgcaaagttg |
33026295 |
T |
|
| Q |
101 |
atgggattagaacaatccccttcaagaacatttccatctgtcatgcaaaaacagtttgagaatcaaaagattgtgaatcagaagagacctgtgttcgaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33026296 |
atgggattagaacaatccccttcaagaacatttccatctgtcatgcaaaaacagtctgagaatcaaaagattgtgaatcagaagagacctgtgttcgaga |
33026395 |
T |
|
| Q |
201 |
ttgacacaccgaaggtaagaa |
221 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
33026396 |
ttgacacaccgaagttaagaa |
33026416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University