View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_527 (Length: 226)

Name: NF9288A_low_527
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_527
NF9288A_low_527
[»] chr6 (13 HSPs)
chr6 (19-223)||(7050508-7050712)
chr6 (19-223)||(10569151-10569353)
chr6 (19-223)||(20524136-20524340)
chr6 (19-223)||(32438251-32438455)
chr6 (57-223)||(11355958-11356124)
chr6 (19-214)||(18644031-18644226)
chr6 (54-223)||(7372189-7372357)
chr6 (19-171)||(32517672-32517824)
chr6 (116-226)||(6900232-6900342)
chr6 (19-122)||(6902000-6902103)
chr6 (46-132)||(33268069-33268155)
chr6 (50-115)||(32455053-32455118)
chr6 (79-141)||(24431587-24431649)
[»] chr3 (30 HSPs)
chr3 (19-226)||(42280253-42280461)
chr3 (19-223)||(48829995-48830199)
chr3 (19-226)||(51685357-51685564)
chr3 (19-226)||(610360-610567)
chr3 (19-226)||(46113233-46113440)
chr3 (50-223)||(23292371-23292544)
chr3 (50-223)||(41978497-41978670)
chr3 (50-223)||(27898316-27898489)
chr3 (54-223)||(30599413-30599582)
chr3 (50-223)||(17516079-17516252)
chr3 (50-223)||(21349463-21349636)
chr3 (50-223)||(43765890-43766063)
chr3 (50-223)||(44275418-44275591)
chr3 (50-223)||(44794968-44795141)
chr3 (50-214)||(2225374-2225538)
chr3 (19-223)||(2377765-2377969)
chr3 (54-223)||(2660983-2661152)
chr3 (50-223)||(7884095-7884268)
chr3 (19-223)||(35904896-35905103)
chr3 (50-223)||(46198489-46198661)
chr3 (50-221)||(46609740-46609911)
chr3 (50-173)||(54899252-54899375)
chr3 (50-221)||(38192475-38192646)
chr3 (50-221)||(46309762-46309933)
chr3 (50-221)||(53093215-53093386)
chr3 (23-187)||(24845666-24845833)
chr3 (107-223)||(53190118-53190237)
chr3 (19-111)||(53188871-53188963)
chr3 (175-223)||(54899182-54899230)
chr3 (79-163)||(35862691-35862775)
[»] chr7 (26 HSPs)
chr7 (19-226)||(38550441-38550648)
chr7 (19-223)||(37114699-37114903)
chr7 (19-223)||(6604274-6604478)
chr7 (50-223)||(23905454-23905627)
chr7 (23-226)||(37792209-37792412)
chr7 (54-223)||(38473330-38473498)
chr7 (19-223)||(45360086-45360290)
chr7 (23-226)||(48851499-48851701)
chr7 (50-223)||(27665248-27665421)
chr7 (50-223)||(29995718-29995891)
chr7 (19-223)||(22154649-22154853)
chr7 (19-223)||(22210564-22210768)
chr7 (19-226)||(47385386-47385588)
chr7 (19-223)||(35692521-35692725)
chr7 (19-223)||(39858413-39858617)
chr7 (19-223)||(13168832-13169036)
chr7 (50-223)||(34776163-34776336)
chr7 (50-223)||(46438712-46438885)
chr7 (51-223)||(24227624-24227796)
chr7 (51-221)||(35402563-35402733)
chr7 (50-141)||(69032-69123)
chr7 (23-187)||(48310748-48310914)
chr7 (137-207)||(66845-66915)
chr7 (50-132)||(20478921-20479003)
chr7 (79-163)||(13035621-13035705)
chr7 (186-223)||(30939747-30939784)
[»] chr4 (21 HSPs)
chr4 (23-226)||(2692461-2692664)
chr4 (19-226)||(54386887-54387094)
chr4 (19-223)||(48645918-48646120)
chr4 (50-223)||(49523881-49524054)
chr4 (50-223)||(35402870-35403043)
chr4 (54-223)||(41760933-41761102)
chr4 (50-223)||(42981369-42981542)
chr4 (50-223)||(11255132-11255305)
chr4 (50-223)||(43520187-43520360)
chr4 (19-223)||(51012676-51012880)
chr4 (80-226)||(11602423-11602569)
chr4 (50-223)||(41782271-41782444)
chr4 (50-221)||(319864-320035)
chr4 (50-221)||(4172704-4172875)
chr4 (50-221)||(33265336-33265507)
chr4 (23-184)||(11640838-11641004)
chr4 (50-207)||(43507993-43508150)
chr4 (96-183)||(52867416-52867503)
chr4 (50-221)||(834257-834427)
chr4 (50-221)||(5438536-5438702)
chr4 (79-163)||(7150221-7150305)
[»] chr1 (22 HSPs)
chr1 (19-223)||(15105195-15105399)
chr1 (19-223)||(3012624-3012828)
chr1 (50-223)||(51895367-51895540)
chr1 (19-226)||(52642807-52643012)
chr1 (19-223)||(6817887-6818091)
chr1 (50-223)||(2870348-2870521)
chr1 (50-223)||(34777339-34777512)
chr1 (19-223)||(26224724-26224928)
chr1 (19-223)||(31237677-31237881)
chr1 (50-223)||(4855168-4855341)
chr1 (19-223)||(27088036-27088241)
chr1 (19-223)||(50555273-50555478)
chr1 (62-221)||(33600366-33600525)
chr1 (50-219)||(46582790-46582959)
chr1 (19-171)||(25277546-25277698)
chr1 (19-171)||(37345137-37345289)
chr1 (50-221)||(8168533-8168704)
chr1 (19-171)||(45045674-45045826)
chr1 (50-132)||(9120844-9120926)
chr1 (50-132)||(1443400-1443482)
chr1 (62-132)||(47012256-47012326)
chr1 (79-141)||(3370338-3370400)
[»] chr8 (26 HSPs)
chr8 (19-222)||(26239613-26239816)
chr8 (19-226)||(7744302-7744509)
chr8 (19-204)||(9672346-9672531)
chr8 (19-223)||(42942543-42942747)
chr8 (19-222)||(41824842-41825045)
chr8 (54-223)||(41041790-41041959)
chr8 (50-223)||(27691915-27692088)
chr8 (50-223)||(38547976-38548149)
chr8 (50-222)||(8609009-8609181)
chr8 (19-223)||(22273008-22273212)
chr8 (50-223)||(13107575-13107748)
chr8 (50-223)||(33708012-33708185)
chr8 (62-223)||(40338894-40339055)
chr8 (50-223)||(13283145-13283313)
chr8 (19-173)||(5037235-5037389)
chr8 (50-221)||(35510167-35510338)
chr8 (62-221)||(29237945-29238104)
chr8 (50-221)||(33761661-33761832)
chr8 (19-172)||(3152710-3152863)
chr8 (62-221)||(600839-600998)
chr8 (86-223)||(13485351-13485483)
chr8 (50-221)||(15307044-15307214)
chr8 (50-221)||(15487413-15487583)
chr8 (50-221)||(27405345-27405515)
chr8 (23-168)||(11720551-11720697)
chr8 (189-223)||(5037208-5037242)
[»] scaffold0004 (1 HSPs)
scaffold0004 (19-226)||(107756-107963)
[»] chr5 (15 HSPs)
chr5 (50-223)||(8540420-8540593)
chr5 (19-223)||(32135005-32135209)
chr5 (19-223)||(30464808-30465012)
chr5 (50-223)||(7268594-7268767)
chr5 (19-223)||(2180524-2180727)
chr5 (50-223)||(28821129-28821302)
chr5 (19-223)||(12737854-12738058)
chr5 (19-223)||(12800677-12800881)
chr5 (19-223)||(21841750-21841954)
chr5 (50-223)||(2853470-2853643)
chr5 (82-223)||(24540425-24540566)
chr5 (23-147)||(41494617-41494741)
chr5 (50-221)||(42472685-42472855)
chr5 (50-132)||(40781430-40781512)
chr5 (50-132)||(29620942-29621024)
[»] chr2 (16 HSPs)
chr2 (51-223)||(40560993-40561165)
chr2 (50-223)||(14388304-14388477)
chr2 (19-219)||(6798278-6798478)
chr2 (62-223)||(39663995-39664156)
chr2 (50-222)||(2767683-2767855)
chr2 (19-223)||(16763714-16763918)
chr2 (19-223)||(19907450-19907654)
chr2 (50-223)||(17696975-17697148)
chr2 (54-223)||(39455928-39456096)
chr2 (87-223)||(44708996-44709132)
chr2 (139-223)||(42518524-42518608)
chr2 (50-221)||(24206741-24206914)
chr2 (50-221)||(6784490-6784662)
chr2 (50-132)||(37021388-37021470)
chr2 (111-184)||(37646222-37646296)
chr2 (79-163)||(161216-161300)
[»] scaffold0564 (1 HSPs)
scaffold0564 (50-223)||(9018-9191)
[»] scaffold0345 (1 HSPs)
scaffold0345 (57-223)||(311-477)
[»] scaffold0058 (2 HSPs)
scaffold0058 (54-223)||(4053-4222)
scaffold0058 (54-223)||(5225-5394)
[»] scaffold0920 (1 HSPs)
scaffold0920 (23-85)||(1690-1752)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 7050712 - 7050508
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7050712 ttcaatcaaattggtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtcattgaattttcacaacatat 7050613  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7050612 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacaaacactttgattgtaaaaagacagacatttgcataccatcataag 7050513  T
Q  219 tcata 223  Q
    |||||    
T  7050512 tcata 7050508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 10569353 - 10569151
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| |||| |||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  10569353 ttcaatcaaattgatccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttca--acatat 10569256  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  10569255 atcattgtgatccttggtgcatacatttgctaaacaaagtaaaaagtaaaaaacagacactttgattgtaaaaagatagacatttgcatatcatcataag 10569156  T
Q  219 tcata 223  Q
    |||||    
T  10569155 tcata 10569151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 20524340 - 20524136
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | | | ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  20524340 ttcaatcaaattggtccttgaattatatatgtatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 20524241  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  20524240 atcactatgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcataccatcataag 20524141  T
Q  219 tcata 223  Q
    |||||    
T  20524140 tcata 20524136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 32438251 - 32438455
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||    
T  32438251 ttcaatcatattggtcctttaattatatgcatatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaatagat 32438350  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| | ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  32438351 atcactatgatccttggtccatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatcataag 32438450  T
Q  219 tcata 223  Q
    |||||    
T  32438451 tcata 32438455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 11356124 - 11355958
Alignment:
Q  57 cataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacata 156  Q
    |||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  11356124 catatcgatcctcaaattagtaaaaataccatcaaacaggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaacaaa 11356025  T
Q  157 gtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  11356024 gtaaaaagtaaaagacaaacactttgattataaaaagacagacatttgcataccatcattagtcata 11355958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 18644226 - 18644031
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||| ||  ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  18644226 ttcaatcacattggtccttgaattatatgcatatccattatttcgatcatcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 18644127  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatca 214  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  18644126 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatca 18644031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 7372189 - 7372357
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||   | |||| |||||||||||||||||||||||| |||||    
T  7372189 catcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaatcga-atcactgtgatccttggtgcatacatttgttgaac 7372287  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  7372288 aaagtaaaaagtaaaagacagacactttgattataaaaagacagacattttcataccatcataagtcata 7372357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 32517824 - 32517672
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||| | ||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |     
T  32517824 ttcaatcaaattggtccttcaattatatgcatatccatcataccgatcctcaaattagtgaaaataccatcaaatagttccttgaattttcacaacagac 32517725  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaaga 171  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32517724 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaaga 32517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 6900342 - 6900232
Alignment:
Q  116 tatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcat 215  Q
    ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  6900342 tatatcactgtgatccttggttcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattgtaaaaggacagacatttgcataccattat 6900243  T
Q  216 aagtcatacat 226  Q
    |||||||||||    
T  6900242 aagtcatacat 6900232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 6902103 - 6902000
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6902103 ttcaatcaaattggtccttctattgtatgtctatccatcatatcaatccccaaattagtgaaaatatcatcaaataagtccttgaattttcacaacatat 6902004  T
Q  119 atca 122  Q
    ||||    
T  6902003 atca 6902000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 33268069 - 33268155
Alignment:
Q  46 tgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33268069 tgtctatccatcatatcgatccctaaattattgaaaataccatcaaataagtccttgaattttcacaacatatatcaatgtgatcct 33268155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 32455053 - 32455118
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaaca 115  Q
    ||||||||||  |||||||||||||| |||||||||||||||||  ||||||||||| ||| ||||    
T  32455053 tatccatcatttcgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataaca 32455118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 24431587 - 24431649
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcata 141  Q
    |||||||||||||||||||||||||||| |   |||| || |||  |||||||||||||||||    
T  24431587 aaaataccatcaaataagtccttgaattatttaaacaaatgtcaacgtgatccttggtgcata 24431649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 42280461 - 42280253
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42280461 ttcaatcaaattggtccttctattgtatgtctatccatcatatcaatccccaaattagtgaaaatatcatcaaataagtccttgaattttcacaacatat 42280362  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagt-aaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataa 217  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42280361 atcattgtgatccttggtgcatacatttgctgaacaaagtaaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataa 42280262  T
Q  218 gtcatacat 226  Q
    |||||||||    
T  42280261 gtcatacat 42280253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 48829995 - 48830199
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48829995 ttcaatcaaattggtccttctattgtatgtctatccatcatatcgatctccaaattagtgaaaataccatcaaacaagtccttgaattttcacaacatat 48830094  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||    
T  48830095 atcactgtgatccttagtgcatacatttgctgaacaaagtaaaaagtaaaagacatatactttgattgtaaaaagacagacatttgtatatcatcataag 48830194  T
Q  219 tcata 223  Q
    |||||    
T  48830195 tcata 48830199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 51685564 - 51685357
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| |||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51685564 ttcaatcaaattggtccttctattgtatgtctatcgatcatatcaatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 51685465  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  51685464 atcactgtgatcgttggtgcatatatttgctgaacaaagtaaaaagtaaaagacaaacactttgattgtaaaaagacggacatttgcaaaccatcataag 51685365  T
Q  219 tcatacat 226  Q
    ||||||||    
T  51685364 tcatacat 51685357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 610567 - 610360
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  610567 ttcaatcaaattggtccttctattgtatgtctatccatcgcatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacataa 610468  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  ||||||||||||||  ||||||||    
T  610467 atcactatgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattgtaaaaaagcagacatttgcatataatcataag 610368  T
Q  219 tcatacat 226  Q
    ||||||||    
T  610367 tcatacat 610360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 46113440 - 46113233
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||| ||||||||| | | ||||  ||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  46113440 ttcaatcaaattggtccttctattgtatgtttatccatcacatcaatccctaaattagtgaagataccatcaaacaagtccttgaattttcacaacataa 46113341  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  46113340 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacaaacactttgattgtaaaaagacagacatttgcatatcatcataag 46113241  T
Q  219 tcatacat 226  Q
    ||||||||    
T  46113240 tcatacat 46113233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 23292371 - 23292544
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  23292371 tatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagatatcattgtgatccttggtgcataaatttgct 23292470  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23292471 gaacaaagtaaaaagtaaaagacatacactttgattataaaaagacagacatttgcataccatcataagtcata 23292544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 41978670 - 41978497
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  41978670 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 41978571  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  41978570 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatcataagtcata 41978497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 27898316 - 27898489
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  27898316 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccctggtgcatacatttgct 27898415  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  27898416 gaacaaagtaaaaactaaaagacagacactttgattataaaaagacagacatttgcataccatcataaatcata 27898489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 30599413 - 30599582
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  30599413 catcatattgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgcagaac 30599512  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30599513 aaagtaaaaagtaaaagacaaacactttgattataaaaagacagacatttgcataccatcataagtcata 30599582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 17516252 - 17516079
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17516252 tatccatcatatcgatactcaaattagtaaaaataccatcaaataggtccttgaattttcacaacagatatcattgtgatccttggtgcatacatttgct 17516153  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
     |||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17516152 taacaaagtaaaaagtaaaagacagatactttgattataaaaagacagacatttgcatatcatcataagtcata 17516079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 21349636 - 21349463
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||| |||||||||||||||||||||    
T  21349636 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacaattatcactgtggtccttggtgcatacatttgct 21349537  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  21349536 gaacaaagtaaaaagtaaaagacaaacactttgattataaaaagatagacatttgcatactatcataagtcata 21349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 43766063 - 43765890
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  43766063 tatccatcatatcgatcatcaaattagtgaaaatactatcaaatatgtccttgaattttcacaacagatatcactatgatccttggtgcatacatttgct 43765964  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  43765963 gaacaaagtaaaaagtaaaagacaaacactttgattataaaaagacagacatttgcataccatcataaatcata 43765890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 44275418 - 44275591
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  44275418 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggttcttgaattttcacaatagatatcattgtgatccttgatgcatacatttgct 44275517  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  44275518 gaacaaagtaaaaattaaaagacaaacactttgattataaaaagacagtcatttgcataccatcataagtcata 44275591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 44795141 - 44794968
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  44795141 tatccatcatatcgatcctcaaattagtttaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 44795042  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  44795041 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacggacattttcataccatcataagtcata 44794968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 2225374 - 2225538
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2225374 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 2225473  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatca 214  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||    
T  2225474 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatca 2225538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 2377969 - 2377765
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  2377969 ttcaatcaaattggtccttgaattatatgcatatccatcataacgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 2377870  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||| | ||||||||| ||||||||     
T  2377869 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaactaaaagacaaacactttgattataaaaagacaaatatttgcatatcatcataaa 2377770  T
Q  219 tcata 223  Q
    |||||    
T  2377769 tcata 2377765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 2661152 - 2660983
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||| ||  ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2661152 catcatatcgatcctcaaattggtttaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaac 2661053  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  2661052 aaagtaaaaagtaaaagacagacactttgattataaaaagacagacattttcataccatcataagtcata 2660983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 7884095 - 7884268
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  7884095 tatccatcatttcaatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 7884194  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||| | ||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  7884195 gaacaaagtaaaaagtaaaagatagacactttgattataaaaagacacacatttgcctaccatcataagtcata 7884268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 35904896 - 35905103
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||    
T  35904896 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtcattgaattttcacaacagat 35904995  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatt---tgcataccatcat 215  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||   || ||||||||||    
T  35904996 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgatgaataccatcat 35905095  T
Q  216 aagtcata 223  Q
    ||||||||    
T  35905096 aagtcata 35905103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 46198661 - 46198489
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    |||| |||||| |||||||||||||||| |||||||||||||||| ||||| || |||| |||||| |||||||||||||| ||| ||||||||||||||    
T  46198661 tatctatcatatcgatcctcaaattagtaaaaataccatcaaataggtcctggattttt-acaacagatatcattgtgatctttgatgcatacatttgct 46198563  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  46198562 gaacaaagtaaaaagtaaaagacagacactttgattataaaaaaacagacatttgcataccatcataagtcata 46198489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 46609740 - 46609911
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  46609740 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 46609839  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  46609840 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 46609911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 54899375 - 54899252
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54899375 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacatatatcactgtgatccttggtgcatacatttgct 54899276  T
Q  150 gaacatagtaaaaagtaaaagaca 173  Q
    ||||| ||||||||||||||||||    
T  54899275 gaacaaagtaaaaagtaaaagaca 54899252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 38192475 - 38192646
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  38192475 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 38192574  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| |||||||| |   |||||||||||    
T  38192575 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcgttatatcataagtca 38192646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 46309933 - 46309762
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| ||||||| || |||||||||||||||    
T  46309933 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcatttgtgcatacatttgct 46309834  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  46309833 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 46309762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 53093215 - 53093386
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  53093215 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 53093314  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| | ||||||||| |||||||||| ||||||||||   |||||||||||    
T  53093315 gaacaaagtaaaatgtaaaagacaaatactttgattataaaaagacaaacatttgcattatatcataagtca 53093386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 24845833 - 24845666
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaa-taccatcaaataagtccttgaattttcacaacatatatc 121  Q
    |||| ||||||||||||||||| ||||||| ||||| | || |||  |||||||| |||| |||||||||||||||| ||||||| ||||||||||||||    
T  24845833 atcaaattggtccttctattgtttgtctatgcatcaaatcgttccctaaattagttaaaaataccatcaaataagtctttgaattatcacaacatatatc 24845734  T
Q  122 attgtgatccttggtgcatacatttgctgaacatagtaaaaagt--aaaagacatacactttgattgt 187  Q
    | ||||||| ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  24845733 aatgtgatctttggtgcatacatttgctgaacaaagtaaaaagtaaaaaagacatacactttgattgt 24845666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 53190118 - 53190237
Alignment:
Q  107 ttcacaacatatatcattgtgatccttggtgcatacatttgctgaaca---tagtaaaaagtaaaagacatacactttgattgtaaaaagacagacattt 203  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||   || |||||||||||||||| ||||||||||| |||||||||| | ||||    
T  53190118 ttcacaacagatatcactgtgatccttggtgcatacatttgctgaacaaattattaaaaagtaaaagacagacactttgattataaaaagacacatattt 53190217  T
Q  204 gcataccatcataagtcata 223  Q
    ||||||||||||||||||||    
T  53190218 gcataccatcataagtcata 53190237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 53188871 - 53188963
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcac 111  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||  ||||||||| ||| ||||||||||||    
T  53188871 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaatgtcatcaaataggtcattgaattttcac 53188963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 54899230 - 54899182
Alignment:
Q  175 acactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  54899230 acactttgattataaaaagacacacatttgcatactatcataagtcata 54899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 35862691 - 35862775
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaa 163  Q
    ||||||| |||| ||||||||||||||| |   |||| || ||| ||||||||||| |||||| || ||| ||||| ||||||||    
T  35862691 aaaatacaatcagataagtccttgaattatttaaacagatgtcaatgtgatccttgttgcatatatgtgcagaacaaagtaaaaa 35862775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 38550441 - 38550648
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38550441 ttcaatcaaattagtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtccttgaatttttacaacatat 38550540  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38550541 atcactgtgatccttggtgcatacatttgctgaacaaaataaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 38550640  T
Q  219 tcatacat 226  Q
    ||||||||    
T  38550641 tcatacat 38550648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 37114699 - 37114903
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  37114699 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 37114798  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  37114799 atcattgtaatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagaaatacactttgattataaaaagacagacatttgcataccatcataag 37114898  T
Q  219 tcata 223  Q
    |||||    
T  37114899 tcata 37114903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 6604478 - 6604274
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  6604478 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgacttttcacaacatat 6604379  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6604378 atcactgtgatcattggtgcatacatttactgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcataccatcataag 6604279  T
Q  219 tcata 223  Q
    |||||    
T  6604278 tcata 6604274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 23905454 - 23905627
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  23905454 tatcaatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcattgtgatctttggtgcatacatttgct 23905553  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23905554 gaacaaagtaaaaagtaaaagaaaaacactttgattataaaaagacagacatttgcataccatcataagtcata 23905627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 37792209 - 37792412
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatca 122  Q
    |||| ||||||||||||||||  |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37792209 atcaaattggtccttctattgcatgtctatccatcatattgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaccatatatca 37792308  T
Q  123 ttgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcat 222  Q
     ||||||| |||||||||||||||| || ||| ||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||| |||||    
T  37792309 ctgtgatcattggtgcatacatttgttgtacaaagtaaaaagtaaaagtcaaagactttgattgtaaaaagacagacatttgcttaccatcatatgtcat 37792408  T
Q  223 acat 226  Q
    ||||    
T  37792409 acat 37792412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 38473330 - 38473498
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||    
T  38473330 catcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctaaac 38473429  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38473430 aaagtaaaaagtaaaa-acatacactttgattataaaaagacagacatttgcataccatcataagtcata 38473498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 45360290 - 45360086
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  45360290 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctaaaattagtgaaaataccatcaaataggtctttgaattttcacaacatat 45360191  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||     
T  45360190 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaactaaaagataaacactttgattataaaaagacagacatttgcataccatcataaa 45360091  T
Q  219 tcata 223  Q
    |||||    
T  45360090 tcata 45360086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 48851499 - 48851701
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatca 122  Q
    |||| |||||||| |||||||| |||||| ||||||||  |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  48851499 atcaaattggtccctctattgtatgtctacccatcatattgatcca-aaattagtgaaaatctcatcaaataagtccttgaattttcacaacatatatca 48851597  T
Q  123 ttgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcat 222  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| ||    
T  48851598 ttgtgatccttggggcatacatttgctgaccaaagtaaaaagtaaaagacagacactttgattgtaaaaagacatacatttgcataccatcagaagttat 48851697  T
Q  223 acat 226  Q
    ||||    
T  48851698 acat 48851701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 27665248 - 27665421
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  27665248 tatccatcatatcgatcctcaaattagtttaaataccatcaaatatgtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 27665347  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||    
T  27665348 gaacaaagtaaaaagtaaaagacagacactttgattataaaaaggcagacattttcataccatcataagtcata 27665421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 29995718 - 29995891
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  29995718 tatccatcatatcgatcctcaaattagtttaaataccatgaaataggtccttgaattttcacaacaaatatcactgtgatccttggtgcatacatttgct 29995817  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  29995818 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacattttcataccatcataagtcata 29995891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 22154853 - 22154649
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  22154853 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 22154754  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||| ||||||||| ||||||| |||| |||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  22154753 atcactgtgatccatggtgcatatatttgctaaacaaagtaaaaagtaaaagacagactctttgattataaaaagacaaacatttgcataccatcataag 22154654  T
Q  219 tcata 223  Q
    |||||    
T  22154653 tcata 22154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 22210768 - 22210564
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  22210768 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 22210669  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||| ||||||||| ||||||| |||| |||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||    
T  22210668 atcactgtgatccatggtgcatatatttgctaaacaaagtaaaaagtaaaagacagactctttgattataaaaagacaaacatttgcataccatcataag 22210569  T
Q  219 tcata 223  Q
    |||||    
T  22210568 tcata 22210564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 47385386 - 47385588
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||| | ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||     
T  47385386 ttcaatcaaattggtccttctattatatgtctatccatcatatcgatccccaaattagtgaaattaccatcaaataagtccttgaattttcacaacatac 47385485  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||     ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||     
T  47385486 atca-tgtgatc----atgcatacatttgctgaacaaagtaaaaagtaaaagacagacacattgattgtaaaaagacagacatttacataccatcataac 47385580  T
Q  219 tcatacat 226  Q
    | ||||||    
T  47385581 tgatacat 47385588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 35692521 - 35692725
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||    
T  35692521 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtcattgaattttcacaacagat 35692620  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||| |||||| ||||  ||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  35692621 atcactgtgatccttggtgcatatatttgccgaacgaagtaaaaagcaaaagacagacactttgattataaaaagacaaacatttgcataccatcataag 35692720  T
Q  219 tcata 223  Q
    |||||    
T  35692721 tcata 35692725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 39858413 - 39858617
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||    
T  39858413 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaatgagtgaaaataccatgaaataggtccttgaattttcacaacagat 39858512  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||     
T  39858513 atcactgtgatcattggtgcatacatttgctgaacaaagtaaaaactaaaagacagacactttgattataaaaagacagacatttgcataccattataaa 39858612  T
Q  219 tcata 223  Q
    |||||    
T  39858613 tcata 39858617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 13169036 - 13168832
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||    
T  13169036 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaacataccatcaaataggtccttgaattttcacaacagat 13168937  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||||||| |||||||| | |||||| ||||||||| ||||||||||| |||||| ||||||||||||||| ||| ||||     
T  13168936 atcaatgtgatccttggtgcatacattcgctgaacaaaataaaaactaaaagacagacactttgattataaaaatacagacatttgcatatcattataaa 13168837  T
Q  219 tcata 223  Q
    |||||    
T  13168836 tcata 13168832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 34776163 - 34776336
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34776163 tatccatcatatcgatcctcaaattagtgaaaataccatcaaatagatctttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 34776262  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
     |||| |||||||| ||||||||| |||||  |||| |||||||||| |||||||||||||||||||| |||||    
T  34776263 aaacaaagtaaaaactaaaagacagacactcagattataaaaagacaaacatttgcataccatcataaatcata 34776336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 46438712 - 46438885
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| | |||||||||||| |||||||||||    
T  46438712 tatccatcatatcgatcctcaaataagtgaaaataccatcaaataggtcattgaattttcacaacagatatcactttgatccttggtggatacatttgct 46438811  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||| | ||||||||||| |||||| ||||||||||| || |||||| |||||||||||||||||||||||||||    
T  46438812 gaatagagtaaaaagtagaagacaaacactttgattatagaaagacggacatttgcataccatcataagtcata 46438885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 24227624 - 24227796
Alignment:
Q  51 atccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctg 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||| | | || ||||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  24227624 atccatcatatcaatcctcaaattagtgaaaataccatcaaataggacatttaattttcacaacagatatcactgtgatcattggtacatacatttgctg 24227723  T
Q  151 aacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    |||| |||||||||||||||||| |||||||||||  ||||||||||||||||| |||||||||||| |||||    
T  24227724 aacaaagtaaaaagtaaaagacagacactttgattacaaaaagacagacatttgtataccatcataaatcata 24227796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 35402563 - 35402733
Alignment:
Q  51 atccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctg 150  Q
    |||||||||  ||||||||||||||||||||||| ||||||||  ||||||||||| ||| |||| |||||| |||||||||| | ||||| ||||||||    
T  35402563 atccatcatttcgatcctcaaattagtgaaaatatcatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgagcatatatttgctg 35402662  T
Q  151 aacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    |||| ||||||| |||||||| | ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  35402663 aacaaagtaaaatgtaaaagataaacactttgattataaaaagacaaacatttgcattatatcataagtca 35402733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 69123 - 69032
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcata 141  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||| ||||||||||||||||||    
T  69123 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattatcataacagatatcaatgtgatccttggtgcata 69032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 48310914 - 48310748
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaa-taccatcaaataagtccttgaattttcacaacatatatc 121  Q
    |||| ||||||| ||||||||| ||||||| ||||| | |||| |  ||||||||||||| || ||||||||||||| ||||||| ||||||||||||||    
T  48310914 atcaaattggtcattctattgtttgtctatgcatcaaatcgattcctaaattagtgaaaaatatcatcaaataagtcattgaattatcacaacatatatc 48310815  T
Q  122 attgtgatccttggtgcatacatttgctgaacatagta-aaaagtaaaagacatacactttgattgt 187  Q
    | | ||||| ||| | |||| |||||||||||| |||| ||||  |||||||| |||||||||||||    
T  48310814 aatatgatctttgctacatatatttgctgaacaaagtagaaaataaaaagacagacactttgattgt 48310748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 66915 - 66845
Alignment:
Q  137 gcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcat 207  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| || |||||||||    
T  66915 gcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagaaaggcatttgcat 66845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 20479003 - 20478921
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||  |||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| |||||||||    
T  20479003 tatccatcatttcgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtgatcct 20478921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 13035705 - 13035621
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaa 163  Q
    |||||||||||||||||||||||||||| |   |||| || ||| |||||||||||||||||| || |||  |||| ||||||||    
T  13035705 aaaataccatcaaataagtccttgaattatttaaacagatgtcaatgtgatccttggtgcatatatgtgcaaaacaaagtaaaaa 13035621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 30939747 - 30939784
Alignment:
Q  186 gtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30939747 gtaaaaagacagacatttgcatatcatcataagtcata 30939784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 2692461 - 2692664
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatca 122  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2692461 atcaaattggtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaatatcatcaaataagtccttgaattttcacaacatatatca 2692560  T
Q  123 ttgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcat 222  Q
    |||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2692561 ttgtgatccttggttcatacatttgttgaacaaagtaaaaagtaaaagacagacactttgattgtaaaaagacagacatttgcataccatcataagtcat 2692660  T
Q  223 acat 226  Q
    ||||    
T  2692661 acat 2692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 54387094 - 54386887
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54387094 ttcaatcaaattggtccttcgattgtatgtctctccatcatatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 54386995  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||  || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54386994 atcactgcaattcttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 54386895  T
Q  219 tcatacat 226  Q
    ||||||||    
T  54386894 tcatacat 54386887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 48645918 - 48646120
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48645918 ttcaatcaaattggtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 48646017  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||  |||||||||||||||||||||||    
T  48646018 atcactgtgatccttggtgcatacatttgctgaataaagtaaaaagtaaaagacaaatactttgattgtaaaaag--agacatttgcataccatcataag 48646115  T
Q  219 tcata 223  Q
    |||||    
T  48646116 tcata 48646120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 49524054 - 49523881
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  49524054 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacaaatataactgtgatccttggtgcatacatttgct 49523955  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  49523954 gaacaaagtaaaaagtaaaagacagacactttgattataaaaacacagacatttgcataccatcataagtcata 49523881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 35402870 - 35403043
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  35402870 tatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 35402969  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| ||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35402970 gaacaaagtaaaaagtaaacgacagacactttgattataaaaagacaaacatttgcataccatcataagtcata 35403043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 41760933 - 41761102
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||    
T  41760933 catcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcataccagatatcactgtgatccttggtgcatacatttgctgaac 41761032  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41761033 aaagtaaaaagtaaaagacaaacactttgattataaaaagacagacatttgcataccatcataagtcata 41761102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 42981542 - 42981369
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    |||| |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  42981542 tatctatcatatcgatccttaaattagtgaaaataccatcaaataggtccttgaattttcacaacaggtatcactgtgatccttggtgcatacatttgct 42981443  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42981442 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcataccatcataagtcata 42981369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 11255132 - 11255305
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| || |||||||||||||||    
T  11255132 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatcattagtgcatacatttgct 11255231  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    || || |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  11255232 gagcaaagtaaaaagtaaaagacagacactttgattataaaaagacagatatttgcataccatcataagtcata 11255305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 43520360 - 43520187
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  43520360 tatccatcatatcgatcctcaaattagtttaaataccatcaaatagatccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 43520261  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  43520260 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacattttcataccatcataagtcata 43520187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 51012880 - 51012676
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  | ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||    
T  51012880 ttcaatcacattggtccttgaattatatgcatatccatcatttcaatcctcaaattagtgaaaataccatcaaataggtccttaaattttcacaacagat 51012781  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    || | || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  51012780 attactgcgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatcataag 51012681  T
Q  219 tcata 223  Q
    |||||    
T  51012680 tcata 51012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 11602569 - 11602423
Alignment:
Q  80 aaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacact 179  Q
    |||||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  11602569 aaatacaatcaaataagtcgttcaattttcacaacatatatcactgtgatccttggtgcatacatctgctaaacaaagtaaaaagtaaaagacatacact 11602470  T
Q  180 ttgattgtaaaaagacagacatttgcataccatcataagtcatacat 226  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  11602469 ttgattgtaaaaagacagacatttgcataccatcataagtcacacat 11602423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 41782444 - 41782271
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||  |||||||| ||||||||||| ||||||  |||||||||||||||||||||||||    
T  41782444 tatccatcatatcaatcctcaaattagtgaaaatatcatcaaattggtccttgatttttcacaacagatatcaccgtgatccttggtgcatacatttgct 41782345  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
     |||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||| || |||||||||||||    
T  41782344 aaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatatgcacactatcataagtcata 41782271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 319864 - 320035
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  319864 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 319963  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  319964 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 320035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 4172704 - 4172875
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  4172704 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 4172803  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  4172804 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 4172875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 33265507 - 33265336
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  33265507 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 33265408  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  33265407 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 33265336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 11641004 - 11640838
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcatacc-----gatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacata 117  Q
    |||| ||||||||||||||||| ||||||||||||||| |     ||||  ||||||||||||||||| |||||||||||| || |||||||||||||||    
T  11641004 atcaaattggtccttctattgtatgtctatccatcatatcatatcgatctccaaattagtgaaaatacaatcaaataagtcgttcaattttcacaacata 11640905  T
Q  118 tatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgat 184  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  11640904 tatcactgtgatccttggtgcatacatctgctgaacaaagtaaaaagtaaaaaacatacactttgat 11640838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 43508150 - 43507993
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||  ||||||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  43508150 tatccatcatttcgatcctcaaattagtgaagataccatcaaattggtccttgaattatcataacaaatatcaatgtgatcctttgtgcatacatttgct 43508051  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcat 207  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||    
T  43508050 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcat 43507993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 52867416 - 52867503
Alignment:
Q  96 gtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttga 183  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  52867416 gtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtagaagacagacactttga 52867503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 834257 - 834427
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| | ||||||||  ||||||||||| ||| |||| | |||| | |||||||| |  ||||||||||||    
T  834257 tatccatcatttcgatccttaaattagtaaaaaaaacatcaaattggtccttgaattatcataacagaaatcaatttgatcctttggacatacatttgct 834356  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| || ||||| ||||||||| ||||||||| | |||||||||| |||||| |||   |||||||||||    
T  834357 gaacaaag-aaaaaataaaagacaaacactttgaatataaaaagacaaacattttcattatatcataagtca 834427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 5438702 - 5438536
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| | ||||||||    ||||||||| ||| |||| | |||| | |||||||| |  ||||||||||||    
T  5438702 tatccatcatttcgatccttaaattagtaaaaaaaacatcaaat----ccttgaattatcataacagaaatcaatttgatcctttggacatacatttgct 5438607  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| || ||||| ||||||||| ||||||||| | |||||||||| |||||| |||   |||||||||||    
T  5438606 gaacaaagaaaaaa-taaaagacaaacactttgaatataaaaagacaaacattttcattatatcataagtca 5438536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 7150305 - 7150221
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaa 163  Q
    ||||||||||||||||||||||| |||| |   |||| || ||| |||||||||||| ||||| || ||  ||||| ||||||||    
T  7150305 aaaataccatcaaataagtcctttaattatttaaacagatgtcaatgtgatccttggcgcatatatgtgtagaacaaagtaaaaa 7150221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 15105399 - 15105195
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  15105399 ttcaatcaaattggtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacataa 15105300  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||    
T  15105299 atcattgtgatctttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattgcaaaaagacagacattcgcataccatcatgag 15105200  T
Q  219 tcata 223  Q
    |||||    
T  15105199 tcata 15105195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 3012624 - 3012828
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  |||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||    
T  3012624 ttcaatcaaattggtccttgaattatatgcatatccatcatattgatcctcaaattagtgaaaataccatcaaataggtccttggattttcacaacagat 3012723  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3012724 atcattgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattataaaaagacagacatttgcataccatcataag 3012823  T
Q  219 tcata 223  Q
    |||||    
T  3012824 tcata 3012828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 51895367 - 51895540
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51895367 tatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagatatcattgtgatccttggtgcatacatttgct 51895466  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51895467 gaacaaagtaaaaagtaaaagaaatacactttgattataaaaagacagacatttgcataccatcataagtcata 51895540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 52642807 - 52643012
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||| ||||||||  ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52642807 ttcaatcaaattggtctttctattgcatgtctatccatcatatcgatccctaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 52642906  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||||||||  |||||||||||||||||||||  | ||||||| |||||||||||    
T  52642907 atcactgtgatccttggtgcatatatttgctgaacaaagtaaaaagtaaaagac--acactttgattgtaaaaagacgaatatttgcaaaccatcataag 52643004  T
Q  219 tcatacat 226  Q
    ||||||||    
T  52643005 tcatacat 52643012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 6817887 - 6818091
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  6817887 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttggtttttcacaacatat 6817986  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  6817987 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtgaaagacagacactttgattataaaaagacagacatgtgcataccatcataag 6818086  T
Q  219 tcata 223  Q
    |||||    
T  6818087 tcata 6818091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 2870521 - 2870348
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2870521 tatccatcatatcgatcctcaaattagtttaaatatcatcaaataggtccttgaattttcacaacagatatcattgtgatccttggtgcatacatttgct 2870422  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  2870421 gaacaaagtaaaaagtaaaagacatgcactttgattataaaaagacagacattttcataccatcataagtcata 2870348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 34777339 - 34777512
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  34777339 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcataacagatatcactgtgatccttggtgcatacatttgct 34777438  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  34777439 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatcataagtcata 34777512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 26224724 - 26224928
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||    
T  26224724 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaagaccatcaaataggtccttgaattttcacaacaaat 26224823  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||    
T  26224824 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcatatcatcataag 26224923  T
Q  219 tcata 223  Q
    |||||    
T  26224924 tcata 26224928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 31237677 - 31237881
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||    
T  31237677 ttcaatcaaattggtccttgaattatatgcatatccattatatcgatcctcaaattagtgataataccatcaaataggtccttgaattttcacaacagat 31237776  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||| |||||||||    
T  31237777 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacattcactttgactataaaaagacagacatttgcatatcatcataag 31237876  T
Q  219 tcata 223  Q
    |||||    
T  31237877 tcata 31237881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 4855168 - 4855341
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  4855168 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtaatccttggtgcatacatttgct 4855267  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||    
T  4855268 gaacaaagtaaaaagtaaaagacagacaatttgattataaaaagacacacatttgcataccatcataagtcata 4855341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 27088241 - 27088036
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||    
T  27088241 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgacttttcacaacagat 27088142  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgt-aaaaagacagacatttgcataccatcataa 217  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| | ||||||||| | ||||||||| ||||||||    
T  27088141 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaaagacacatatttgcatatcatcataa 27088042  T
Q  218 gtcata 223  Q
    ||||||    
T  27088041 gtcata 27088036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 50555273 - 50555478
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||    
T  50555273 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagat 50555372  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagt-aaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataa 217  Q
    |||||||||||||||||||||||||||| |||||||  || ||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  50555373 atcattgtgatccttggtgcatacatttactgaacaaggtaaaaaactaaaagacagacactttgattataaaaagacagacatttgcatgccatcataa 50555472  T
Q  218 gtcata 223  Q
     |||||    
T  50555473 atcata 50555478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 33600366 - 33600525
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaa 161  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  33600366 cgatcctcaaattagtgaaaatactatcaaatatgtccttgaattttcacaacagatatcaatgtgatccttggtgcatacatttgctgaacaaagtaaa 33600465  T
Q  162 aagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||   |||||||||||    
T  33600466 aagtaaaagacaaacaatttgattgtaaaaagacagacatttgcattatatcataagtca 33600525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 46582790 - 46582959
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  46582790 tatccatcatatcgatcctcaaattagtttaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatctgct 46582889  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagt 219  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||| || |||| |||||||||||||||    
T  46582890 gaacaaagtaaaaagtaaaagacaaacactttgattataaaaagactgatattttcataccatcataagt 46582959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 25277546 - 25277698
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |     
T  25277546 ttcaatcaaattggtccttcaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagac 25277645  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaaga 171  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25277646 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaaga 25277698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 37345289 - 37345137
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||| | ||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |     
T  37345289 ttcaatcaaattggtccttcaattatatgcatatccatcataccgatcctcaaattagtgaaaataccatcaaatagttccttgaattttcacaacagac 37345190  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaaga 171  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37345189 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaaga 37345137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 8168533 - 8168704
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  8168533 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtcattgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 8168632  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
     |||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  8168633 aaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 8168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 45045674 - 45045826
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||| | ||  ||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||| | ||    
T  45045674 ttcaatcaaattggtccttcaattatatgcatatccatcatatcgatcttcaaattagtgaaaatatcatcaaataggtccttgaattttcacaatagat 45045773  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaaga 171  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||||||||||    
T  45045774 atcactgtgatccttggtgcatacatttgttgaacaaagtaaaaagtaaaaga 45045826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 9120844 - 9120926
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||  |||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| |||||||||    
T  9120844 tatccatcatttcgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtgatcct 9120926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 1443482 - 1443400
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||  |||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| ||| |||||    
T  1443482 tatccatcatttcgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtaatcct 1443400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 47012256 - 47012326
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    |||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| |||||||||    
T  47012256 cgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtgatcct 47012326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 3370338 - 3370400
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcata 141  Q
    |||||||||||||||||||| ||||||| |   |||| || ||| ||||||||||||||||||    
T  3370338 aaaataccatcaaataagtctttgaattatttaaacagatgtcaatgtgatccttggtgcata 3370400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 8e-88; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 26239613 - 26239816
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||  ||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26239613 ttcaatccaattggtccttctattgtatgtctatccatcatatcgatccccaaattagtgaaaataccatcaaataagtcattgaattttcacaacatat 26239712  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26239713 atcactgtgatccttggtgcatacatttgctcaacaaagtaaaaagtaaaagacatacactttgattgtaaaaagaaagacatttgcataccatcataag 26239812  T
Q  219 tcat 222  Q
    ||||    
T  26239813 tcat 26239816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 7744302 - 7744509
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| |||||| |||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  7744302 ttcaatcaaattggttcttctattgtatgtctatccatcatatcgatccccaaattagtgaaaacaccatcaaataagtccttgaattttcacatcatat 7744401  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
     ||| | | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7744402 ttcacttttattcttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 7744501  T
Q  219 tcatacat 226  Q
    ||||||||    
T  7744502 tcatacat 7744509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 9672346 - 9672531
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9672346 ttcaatcaaattggtccttctattgtatgtctatccatcgtatcgatccccaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 9672445  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttg 204  Q
    |||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  9672446 atcactgtgatccttggtgcatacatttgctgaacaaactaaaaagtaaaagacagacactttgattgtaaaaagacagacatttg 9672531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 42942747 - 42942543
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||    
T  42942747 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattattgaaaataccatcaaataggtccttgaattttcacaacagat 42942648  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  42942647 atcattgtgatccttggtgcatacatttgttgaacaaagtaaaaagtaaaagacatacactttgattatcaaaagacagacatttgcataccatcataag 42942548  T
Q  219 tcata 223  Q
    |||||    
T  42942547 tcata 42942543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 41824842 - 41825045
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||| ||||||||| |||||||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41824842 ttcaatcaaattggtcattctattgtatgtctatccatcatattgatccccaaattagtgaaaatatcatcaaataagtccttgaattttcacaacatat 41824941  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    ||||  ||||| |||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||     
T  41824942 atcaccgtgatgcttggtgcatacatttgctgaacaaagtaaaaagtaaaagatatacactgtgattgtaaaaagccagacatttgcataccatcataaa 41825041  T
Q  219 tcat 222  Q
    ||||    
T  41825042 tcat 41825045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 41041790 - 41041959
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  41041790 catcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagataccattgtgatccttggtgcatacatttgctgaac 41041889  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41041890 aaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcataccatcataagtcata 41041959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 27692088 - 27691915
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  27692088 tatccatcatatcgatcctcaaattagtttaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 27691989  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  27691988 gaacaaagtaaaaagtaaaagacatacactttgattataaaaagacagacattttcataccatcataagtcata 27691915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 38548149 - 38547976
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  38548149 tatccatcattttgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 38548050  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  38548049 gaacaaagtaaaaagtaaaagacatacactttgattataaaaagacacacatttgcataccatcataagtcata 38547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 8609009 - 8609181
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  8609009 tatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 8609108  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcat 222  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  8609109 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcataccatcataagtcat 8609181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 22273212 - 22273008
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  |||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  22273212 ttcaatcaaattggtccttgaattatatgcatatccatcgtatcgatcatcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 22273113  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||    
T  22273112 atcattgtgatctttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattataaagagacaggcaattgcataccatcataag 22273013  T
Q  219 tcata 223  Q
    |||||    
T  22273012 tcata 22273008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 13107575 - 13107748
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  13107575 tatccatcatttcgattctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 13107674  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||    
T  13107675 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcctaccatcataagtcata 13107748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 33708012 - 33708185
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||    
T  33708012 tatccatcatatcgatcctcaaattagtttaaataccatcaaataggtccttgaattttcacaacagatatcactgtgttccttggtgcatacatttgct 33708111  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  33708112 gaacaaagtaaaaagtaaaagatagacactttgattataaaaagacagacattttcatatcatcataagtcata 33708185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 40338894 - 40339055
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaa 161  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||    
T  40338894 cgatcctcaaattagtgaaaatacaatcaaataggtccttgaattttcacaacagatatcactgtgatccttgttgcatacatttgctgaacaaagtaaa 40338993  T
Q  162 aagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  40338994 aagtaaaagacagacactttgattataaaaagacatacatttgcataccatcataactcata 40339055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 13283313 - 13283145
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||     ||||| ||||||||||||||||||||||||||    
T  13283313 tatccatcatttcgatcctcaaattagtgaaaatacgatcaaataggtccttgaattttcaca-----tatcactgtgatccttggtgcatacatttgct 13283219  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
     |||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  13283218 caacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcatatcatcataagtcata 13283145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 5037389 - 5037235
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||    
T  5037389 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagat 5037290  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagaca 173  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  5037289 atcattgtgatccttggtgcatacatttgttgaacaaagtaaaaagtaaaagaca 5037235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 35510338 - 35510167
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| |||||| |||| ||||| |||||||||||||||    
T  35510338 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagatatcaatgtggtcctttgtgcatacatttgct 35510239  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  35510238 gaacaaagtaaaatgtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 35510167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 29238104 - 29237945
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaa 161  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| | |||| | ||||| || |||||||||||||||||||| ||||||    
T  29238104 cgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagaaatcaatttgatcatttgtgcatacatttgctgaacaaagtaaa 29238005  T
Q  162 aagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  29238004 aagtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 29237945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 33761661 - 33761832
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||||||||||||  ||| ||||||| ||| |||| |||||| |||||||||| |||||||||||||||    
T  33761661 tatccatcatttcgatcctcaaattagtgaaaataccatcaaattggtcattgaattatcataacagatatcaatgtgatcctttgtgcatacatttgct 33761760  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
     |||| ||||||| |||||||||| ||||||||||| ||||| |||| ||||||||||   |||||||||||    
T  33761761 aaacaaagtaaaatgtaaaagacaaacactttgattataaaaggacaaacatttgcattatatcataagtca 33761832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 3152710 - 3152863
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| |||||| |||||||||| ||||||||||||| |   |||| ||||||||||||| ||||||||||| ||| |||||||||||||||||||     
T  3152710 ttcaatcaaattggttcttctattgtatgtctatccatcacattcatccccaaattagtgaaattaccatcaaatcagttcttgaattttcacaacataa 3152809  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagac 172  Q
    |||| ||||||||||||||||||||| | ||||||| |||||||||||||||||    
T  3152810 atcaatgtgatccttggtgcatacatctactgaacaaagtaaaaagtaaaagac 3152863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 600839 - 600998
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaa 161  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||| |||| | |||| | |||||||| |||||||||||||||||| | ||||||    
T  600839 cgatcctcaaattagtgaaaataccatcaaattggtccttgaattatcataacagaaatcaatttgatcctttgtgcatacatttgctgaataaagtaaa 600938  T
Q  162 aagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    |||||||||| | ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  600939 aagtaaaagagaaacactttgattataaaaagacaaacatttgcattatatcataagtca 600998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 13485351 - 13485483
Alignment:
Q  86 catcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgatt 185  Q
    ||||||||| |||||| ||||||||||||| |||||| |||||||||||  |||||||||||||||    ||||||||||| |||||| |||||||||||    
T  13485351 catcaaataggtccttcaattttcacaacagatatcactgtgatccttgaggcatacatttgctga----agtaaaaagtagaagacaaacactttgatt 13485446  T
Q  186 gtaaaaagacagacatttgcataccatcataagtcata 223  Q
     |||||| |||||||||||||||||||||||| |||||    
T  13485447 ataaaaa-acagacatttgcataccatcataaatcata 13485483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 15307214 - 15307044
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| ||||||||||  ||||||||||| ||| |||| | |||| | ||||| || || |||| |||||||    
T  15307214 tatccatcatttcgatccttaaattagtaaaaaaaccatcaaattggtccttgaattatcataacagaaatcaatttgatcatttgtacatatatttgct 15307115  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||| |||||||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  15307114 gaacaaagt-aaaagtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 15307044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 15487583 - 15487413
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| ||||||||||  ||||||||||| ||| |||| | |||| | ||||| || || |||| |||||||    
T  15487583 tatccatcatttcgatccttaaattagtaaaaaaaccatcaaattggtccttgaattatcataacagaaatcaatttgatcatttgtacatatatttgct 15487484  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| ||| |||||||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  15487483 gaacaaagt-aaaagtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 15487413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 27405345 - 27405515
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| | ||||||||  ||||||||||| ||| |||| | |||| | |||||||| |  ||||||||||||    
T  27405345 tatccatcatttcgatccttaaattagtaaaaaaaacatcaaattggtccttgaattatcataacagaaatcaatttgatcctttggacatacatttgct 27405444  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| || ||||| ||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  27405445 gaacaaag-aaaaaataaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 27405515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 11720551 - 11720697
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaa-taccatcaaataagtccttgaattttcacaacatatatc 121  Q
    |||| ||||||||||  ||||| |||||||  |||| | |||| |  | ||||||||||| || ||||||||||||||||||| |||   || ||||  |    
T  11720551 atcaaattggtccttaaattgtttgtctatatatcaaatcgattcctacattagtgaaaaatatcatcaaataagtccttgaagtttttaaaaatatgac 11720650  T
Q  122 attgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaa 168  Q
    | |||||||||||||||||| || || |||||| |||||||||||||    
T  11720651 aatgtgatccttggtgcatatatgtgttgaacaaagtaaaaagtaaa 11720697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 5037242 - 5037208
Alignment:
Q  189 aaaagacagacatttgcataccatcataagtcata 223  Q
    |||||||||||||||| ||||||||||||||||||    
T  5037242 aaaagacagacatttgtataccatcataagtcata 5037208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 107756 - 107963
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||     
T  107756 ttcaatcaaattggtcattctattgtatgtctatccatcatatcgatccctaaattagtgaaaataccatcaaataagtccttaaattttcacaatataa 107855  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  107856 atcactgtgatcattggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcataccatcataag 107955  T
Q  219 tcatacat 226  Q
    ||||||||    
T  107956 tcatacat 107963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 8540593 - 8540420
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  8540593 tatccatcatatcgatcctcaaattagtgaaaatatcatcaaataggtccttgaattttcacaacagatatcattgtgatccttggtgcataaatttgct 8540494  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8540493 gaacaaagtaaaaagtaaaagacatacactttgattataaaaagacagacatttgcataccatcataagtcata 8540420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 32135005 - 32135209
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |     
T  32135005 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacggag 32135104  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  32135105 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacatacactttgattataaaaagacagacatttgcataacatcctaag 32135204  T
Q  219 tcata 223  Q
    |||||    
T  32135205 tcata 32135209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 30464808 - 30465012
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||    
T  30464808 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctaaaattagtgataataccatcaaataggtccttgaattttcacaacagat 30464907  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||    
T  30464908 atcactgtgatccttggtgcatatatttgctgaacaaagtaaaaagtaaaagacatgcactttgactataaaaagacagacatttgcataccatcataag 30465007  T
Q  219 tcata 223  Q
    |||||    
T  30465008 tcata 30465012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 7268767 - 7268594
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  7268767 tatccatcatttcgatcctcaaattagtgaaaataacatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 7268668  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||    
T  7268667 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttacataccatcataagtcata 7268594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 2180727 - 2180524
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  2180727 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagat 2180628  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||||||||     
T  2180627 atcactgtgatccttgatgcatacatttgctgaacaaagtaaaaactaaaagacagacactttgattataaaaagacagac-tttgcataccatcataaa 2180529  T
Q  219 tcata 223  Q
    |||||    
T  2180528 tcata 2180524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 28821302 - 28821129
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||    
T  28821302 tatccatcatatcgatcctcaaattagtgaaaataacatcaaataggtccttgaattttcacaacagatatcactgtgatctttgatgcatacatttgct 28821203  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||| ||||||| |||||||||||| ||||||||| ||||||||||||||    
T  28821202 gaacaaagtaaaaagtaaaagacaaacattttgattataaaaagacagatatttgcatatcatcataagtcata 28821129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 12738058 - 12737854
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||| |||||||||||||||||||| |||||| ||| |||||||||||||||| ||    
T  12738058 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcatcaaattagtgaaaataccaccaaataggtcattgaattttcacaacagat 12737959  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||     
T  12737958 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaactaaaagacagacactttaattataaaaagacagacatttgcataccattataaa 12737859  T
Q  219 tcata 223  Q
    |||||    
T  12737858 tcata 12737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 12800881 - 12800677
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| ||||| |||||||||||||||||||| |||||| ||| |||||||||||||||| ||    
T  12800881 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcatcaaattagtgaaaataccaccaaataggtcattgaattttcacaacagat 12800782  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||     
T  12800781 atcactgtgatccttggtgcatacatttgctgaacaaagtaaaaactaaaagacagacactttaattataaaaagacagacatttgcataccattataaa 12800682  T
Q  219 tcata 223  Q
    |||||    
T  12800681 tcata 12800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 21841954 - 21841750
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||    
T  21841954 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaatagat 21841855  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||| ||| |||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||    
T  21841854 atcactgtgattcttagtgcatacatttgctgaagaaagtaaaaagtaaaagacagacactttgattataaaaagacacacatttgcatatcatcataag 21841755  T
Q  219 tcata 223  Q
    |||||    
T  21841754 tcata 21841750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 2853470 - 2853643
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||  ||||| ||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  2853470 tatccatcatatcgatcctcaaattagtttaaatatcatcaaataggtctttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 2853569  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||||  |||||||||||||    
T  2853570 gaacaaagtaaaaagtaaaagacatgcactttgattataaaaagacagacattttcatattatcataagtcata 2853643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 24540425 - 24540566
Alignment:
Q  82 ataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacacttt 181  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  24540425 ataccatcaaataggtccttgaattttcacaacatatatcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtaaaagacagacacttt 24540524  T
Q  182 gattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    |||| |||||||||| |||||| |||||||||||||||||||    
T  24540525 gattataaaaagacatacattttcataccatcataagtcata 24540566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 41494617 - 41494741
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatca 122  Q
    |||| ||||||||||||||||| |||||||||||||||  ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  41494617 atcaaattggtccttctattgtatgtctatccatcatattgatccccaaatttgtgaaaataccatcaaataattccttgaattttcacaacatatatca 41494716  T
Q  123 ttgtgatccttggtgcatacatttg 147  Q
     ||| |||||| ||||||| |||||    
T  41494717 ctgtaatccttagtgcatatatttg 41494741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 42472685 - 42472855
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||  ||||||| |||||||| |||| | ||||||||  ||||||||||| ||| |||| | |||| | |||||||| |  ||||||||||||    
T  42472685 tatccatcatttcgatccttaaattagtaaaaaaaacatcaaattggtccttgaattatcataacagaaatcaatttgatcctttggacatacatttgct 42472784  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||| || ||||| ||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  42472785 gaacaaag-aaaaaataaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 42472855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 40781512 - 40781430
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||  |||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| |||||||||    
T  40781512 tatccatcatttcgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtgatcct 40781430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 29620942 - 29621024
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||   ||||||||||||| |||||||||||||||||  ||||||||||| ||| |||| | |||| |||||||||    
T  29620942 tatccatcattttgatcctcaaattaatgaaaataccatcaaattggtccttgaattatcataacagagatcaatgtgatcct 29621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 40561165 - 40560993
Alignment:
Q  51 atccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctg 150  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  40561165 atccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacagatatcaatgtgatccttggtgcatacatttgctg 40561066  T
Q  151 aacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |||||    
T  40561065 aacaaagtaaaaagtaaaagccatacactttgattataaaaagacagacatttgcatatcatcataaatcata 40560993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 14388304 - 14388477
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  14388304 tatccatcatatcgatcctcaaattagtgaaaatactatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgct 14388403  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  14388404 gaacaaagtaaaaagtaaaagatagacactttgattataaaaaaacagacatttgcataccatcataagtcata 14388477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 6798478 - 6798278
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||| ||||| |   ||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  6798478 ttcaatcaaattggtccttcaattgtatacatattcatcaaatcgatcctcaaattagtgaaaataccatcaaatatgtccttgaattttcacaacagat 6798379  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  6798378 atcactgtgatccttggtgcatacatttgatgaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcatatcatcataag 6798279  T
Q  219 t 219  Q
    |    
T  6798278 t 6798278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 39663995 - 39664156
Alignment:
Q  62 cgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaa 161  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  39663995 cgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaacatatatcactgtgatccttggtgcatacatttgctgaacaaagtaaa 39664094  T
Q  162 aagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    || ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| |||||    
T  39664095 aactaaaagacagacactttgattataaaaagacagacatctgcataccatcataaatcata 39664156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 2767855 - 2767683
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||||| | |||||| ||||||||||||||||||||||| ||    
T  2767855 tatccatcatatcgatcctcaatttagtgaaaataccatcaaattggtccttgaattttcacaatagatatcactgtgatccttggtgcatacattttct 2767756  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcat 222  Q
    ||||| |||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||    
T  2767755 gaacaaagtaaaaagtaaaagacaaactctttgattataaaaagacagacatttgcataccatcataagtcat 2767683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 16763918 - 16763714
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||    
T  16763918 ttcaatcacattggtccttgaattatatgcatatccatcatttcgatcctcaaattagtgaaaataccatcaaataggtcattgaatttacacaacagat 16763819  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||||||    
T  16763818 atcactgtgatccttggtgcatacatttgctgaacagagtaaaaagtaaaagatagacactttgattataaaaagacacacatttgcatactatcataag 16763719  T
Q  219 tcata 223  Q
    |||||    
T  16763718 tcata 16763714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 19907450 - 19907654
Alignment:
Q  19 ttcaatcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatat 118  Q
    |||||||| ||||||||||  ||| | ||  ||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||    
T  19907450 ttcaatcaaattggtccttgaattatatgcatatccatcatatcgatcctcaaatgagtgaaaataccatgaaataggtccttgaattttcacaacagat 19907549  T
Q  119 atcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataag 218  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||     
T  19907550 atcactgtgatcattggtgcatacatttgctgaacaaagtaaaaactaaaagacagacactttgattataaaaagacagacatttgcataccattataaa 19907649  T
Q  219 tcata 223  Q
    |||||    
T  19907650 tcata 19907654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 17697148 - 17696975
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||| | |||||||||||| ||||||||| |    
T  17697148 tatccatcatatcgatcctaaaattggtgaaaataccatcaaataggtccttgaattttcacaacatacatcactatgatccttggtggatacatttgtt 17697049  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| ||||||||||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  17697048 gaacaaagtaaaaagtagaagacagacactttgattataaaaagacagatatttgcataccatcataagtcata 17696975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 39456096 - 39455928
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    |||||||  ||| ||||||| |||||||||| ||||||||| |||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||    
T  39456096 catcatattgattctcaaatgagtgaaaatatcatcaaataggtccttaaattttcacaacagatatcactatgatccttggtgcatacatttgctgaac 39455997  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||    
T  39455996 aaagtaaaaagtaaaagacaga-actttgattataaaaagacagacatttgtataccatcataagtcata 39455928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 44708996 - 44709132
Alignment:
Q  87 atcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagtaaaagacatacactttgattg 186  Q
    |||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||     
T  44708996 atcaaattggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaacaaagtaaaaagtcaaagacagacactttgatta 44709095  T
Q  187 taaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||||  |||||||||||||||||||||||| ||||    
T  44709096 taaaaatgcagacatttgcataccatcataagacata 44709132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 42518524 - 42518608
Alignment:
Q  139 atacatttgctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  42518524 atacatttgctgaacaaagtaaaaaataaaagacaaacactttgattataaaaagacaggcatttgcataccatcataagtcata 42518608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 24206741 - 24206914
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaatac--catcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttg 147  Q
    ||||||||||  ||||||| |||||||| |||| |   ||||||||  ||||||||||| | | |||| | |||| | |||||||| |  ||||||||||    
T  24206741 tatccatcatttcgatccttaaattagtaaaaaaaaatcatcaaattggtccttgaattattataacagaaatcaatttgatcctttggacatacatttg 24206840  T
Q  148 ctgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    ||||||| |||||||||||||||||| ||| ||||||| |||||||||| ||||||||||   |||||||||||    
T  24206841 ctgaacaaagtaaaaagtaaaagacaaacaatttgattataaaaagacaaacatttgcattatatcataagtca 24206914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 6784490 - 6784662
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaatac-catcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgc 148  Q
    ||||||||||  ||||| | |||||||| |||| |  ||||||||  ||||||||||| ||| |||| | |||| |  ||||||| |  |||||||||||    
T  6784490 tatccatcatttcgatctttaaattagtaaaaaaaaacatcaaattggtccttgaattatcataacagaaatcaattggatcctttggacatacatttgc 6784589  T
Q  149 tgaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtca 221  Q
    |||||| ||| |||||||||||||| ||||||||||| |||||||||| ||||||||||   |||||||||||    
T  6784590 tgaacaaagtcaaaagtaaaagacaaacactttgattataaaaagacaaacatttgcattatatcataagtca 6784662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 37021470 - 37021388
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatcct 132  Q
    ||||||||||   ||||||||||||| |||||| ||||||||||  ||||||||||| ||| |||| |||||| |||||||||    
T  37021470 tatccatcattttgatcctcaaattaatgaaaaaaccatcaaattggtccttgaattatcataacagatatcaatgtgatcct 37021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 37646296 - 37646222
Alignment:
Q  111 caacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaagt-aaaagacatacactttgat 184  Q
    |||||||| | | ||||||| |||||||||| |||||||||||| |||||||||| ||||||||| |||||||||    
T  37646296 caacatatcttaatgtgatctttggtgcatatatttgctgaacaaagtaaaaagtaaaaagacatgcactttgat 37646222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 161300 - 161216
Alignment:
Q  79 aaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacatagtaaaaa 163  Q
    |||||||||||||||||||||||||||| |   |||| || |||  ||||||||||||||||| || |||  |||| ||||||||    
T  161300 aaaataccatcaaataagtccttgaattatttaaacagatgtcaacgtgatccttggtgcatatatgtgcataacaaagtaaaaa 161216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 9191 - 9018
Alignment:
Q  50 tatccatcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgct 149  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||| |||     
T  9191 tatccatcatatcgatcctcaaattagtgaaaataccatcaaataggtccttgaattttcacaatagatatcactgtgatccttggtgcatacatctgcc 9092  T
Q  150 gaacatagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  9091 gaacaaagtaaaaagtaaaagacagacactttgattataaaaagacagacatttgcatactatcataagtcata 9018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 477 - 311
Alignment:
Q  57 cataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaacata 156  Q
    |||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |    
T  477 catatcgatcctcaaattagtaaaaataccatcaaacaggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgccgaacaaa 378  T
Q  157 gtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  377 gtaaaaagtaaaagacaaacactttgattataaaaagacagacatttgcataccatcaggagtcata 311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 4222 - 4053
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||  ||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4222 catcatatcgatcctcaaattagtttaaatatcatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaac 4123  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| | |||||||||||||||  ||||||||||||||||||    
T  4122 aaagtaaaaagtaaaagacagacactttgattatcaaaagacagacatttttataccatcataagtcata 4053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 5394 - 5225
Alignment:
Q  54 catcataccgatcctcaaattagtgaaaataccatcaaataagtccttgaattttcacaacatatatcattgtgatccttggtgcatacatttgctgaac 153  Q
    ||||||| ||||||||||||||||  ||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  5394 catcatatcgatcctcaaattagtttaaatatcatcaaataggtccttgaattttcacaacagatatcactgtgatccttggtgcatacatttgctgaac 5295  T
Q  154 atagtaaaaagtaaaagacatacactttgattgtaaaaagacagacatttgcataccatcataagtcata 223  Q
    | |||||||||||||||||| ||||||||||| | |||||||||||||||  ||||||||||||||||||    
T  5294 aaagtaaaaagtaaaagacagacactttgattatcaaaagacagacatttttataccatcataagtcata 5225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 1690 - 1752
Alignment:
Q  23 atcagattggtccttctattgtctgtctatccatcataccgatcctcaaattagtgaaaatac 85  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||    
T  1690 atcaaattggtccttctattgtatgtctatccatcatatcgatctccaaattagtgaaaatac 1752  T

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