View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_530 (Length: 226)
Name: NF9288A_low_530
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_530 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31425562 - 31425781
Alignment:
| Q |
1 |
aaaagactatactaatatcgagttcatctgaatctttagtaagtaaaatttagcaaaaaattgttccaccgttgaacttggaatttttcaaatgatttgt |
100 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31425562 |
aaaagactaaactaatctcgagttcatccgaatatttagtaagtaaaatttagcaaaaaattgttccaccgttgaacttggaatttttcaaatgatttgt |
31425661 |
T |
|
| Q |
101 |
catagagagcatatcaaccacttgagacaaatcaattaatttatagnnnnnnnnnnnnnggtgaaaatcgggtgtccttcgtgcatgcaactgcagagac |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
31425662 |
catagagagcatatcaaccactcgagacaaatcaattaatttattgttatttttttttttgtgaaaatggggtgtccttcgtgcatacaactgtagagac |
31425761 |
T |
|
| Q |
201 |
taatctcttgagtcttgtag |
220 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
31425762 |
taatctcttaagtcttgtag |
31425781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 24579434 - 24579485
Alignment:
| Q |
165 |
aaatcgggtgtccttcgtgcatgcaactgcagagactaatctcttgagtctt |
216 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
24579434 |
aaatcgggtatcctccgtgtatgcaactgcagagactaatctctcgagtctt |
24579485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 1424739 - 1424681
Alignment:
| Q |
160 |
ggtgaaaatcgggtgtccttcgtgcatgcaactgcagagactaatctcttgagtcttgt |
218 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
1424739 |
ggtgtaaatcgggtgtccttcgtgcgcgcaactgcggagactaatctctcaagtcttgt |
1424681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University