View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_534 (Length: 225)
Name: NF9288A_low_534
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_534 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 3429197 - 3429003
Alignment:
| Q |
24 |
accaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
123 |
Q |
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| T |
3429197 |
accaacattcttggctacccctgtagttttttccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatgaa |
3429098 |
T |
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| Q |
124 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtgttagtat |
218 |
Q |
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| T |
3429097 |
ggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtagatactagtggtaggtgttagtat |
3429003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 3425717 - 3425544
Alignment:
| Q |
25 |
ccaacattcttggctacccctgtagttttgtccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatga-- |
122 |
Q |
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| T |
3425717 |
ccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaagaaaatgaag |
3425618 |
T |
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| Q |
123 |
-aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtag |
195 |
Q |
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| T |
3425617 |
taggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaaagtcatgtggtag |
3425544 |
T |
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