View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_54 (Length: 409)
Name: NF9288A_low_54
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 37600024 - 37600207
Alignment:
| Q |
21 |
attaaggaacacaaccacaatggagaagaggcacaattattttttctaatggcaatcgaaggatatcactagcaaaacgctacgacacataaactcctct |
120 |
Q |
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| T |
37600024 |
attaaggaacacaaccacaatggagaagaggcacaattattttttctaatggcaatcgaaggatatcactagcaaaacgctacgacacataaactccact |
37600123 |
T |
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| Q |
121 |
gaaacactcatacaaacccttagtacacctaaattgttcaaaacaagtatatgaactacatatcacaacattatagaagagcat |
204 |
Q |
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| T |
37600124 |
gaaacactcatacaaacccttagtacgcctaaattgttcaaaacaagtatatgaactacatatcacaacattatagaagagcat |
37600207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 195 - 396
Target Start/End: Original strand, 37600236 - 37600436
Alignment:
| Q |
195 |
agaagagcataatagaaagagaagaaagtcaaagtcaaatataaaattaatgtattatcaattgttgcatcttgtaactaggggtgagaataagtttgat |
294 |
Q |
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| T |
37600236 |
agaagagcataatagaaagagaagaaagtcaaagtcaaatataaaattaatgtattatcaattgttgcatcttgtaactaggggtgagaataaatttgat |
37600335 |
T |
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| Q |
295 |
gagtctacggtatagtctacgaactcagtttagatcagacnnnnnnnnncaaaaacatataaaaccaaggcttttttataagtgtattcaactaaaagat |
394 |
Q |
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| T |
37600336 |
gggtctacggtctagtctacgaacttaatttagattagac-ttttttttcaaaaacatataaaaccaaggcttttttataagtgtattcaactaaaagat |
37600434 |
T |
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| Q |
395 |
at |
396 |
Q |
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|| |
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| T |
37600435 |
at |
37600436 |
T |
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