View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_542 (Length: 224)
Name: NF9288A_low_542
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_542 |
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Alignment Details
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 5696512 - 5696465
Alignment:
| Q |
154 |
attatttctccacctcttcttgcaacaagaatctttgtaaagtcttga |
201 |
Q |
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| T |
5696512 |
attatttctccgcctcttcttgcaacaagaatctttgtaaagtcttga |
5696465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 5670833 - 5670783
Alignment:
| Q |
145 |
atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag |
195 |
Q |
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| T |
5670833 |
atctactttattatttctcctcctcttcttgcaacaataatcattgtaaag |
5670783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 5680326 - 5680276
Alignment:
| Q |
145 |
atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag |
195 |
Q |
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| T |
5680326 |
atctactttattatttctcctcctcttcttgcaacaataatcattgtaaag |
5680276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 5795813 - 5795767
Alignment:
| Q |
20 |
cttatattagtcaccaaaggttatactattgtatgttttcttataag |
66 |
Q |
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| T |
5795813 |
cttatattagtcaccaaaggttatattattgtatgtttgcttataag |
5795767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 195
Target Start/End: Complemental strand, 5694478 - 5694428
Alignment:
| Q |
145 |
atctactttattatttctccacctcttcttgcaacaagaatctttgtaaag |
195 |
Q |
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| T |
5694478 |
atctacttgattatttctcctcctcttcttgcaacaataatcattgtaaag |
5694428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 5736905 - 5736864
Alignment:
| Q |
145 |
atctactttattatttctccacctcttcttgcaacaagaatc |
186 |
Q |
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| T |
5736905 |
atctactttattatttctcctccttttcttgcaacaagaatc |
5736864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 5774017 - 5773976
Alignment:
| Q |
145 |
atctactttattatttctccacctcttcttgcaacaagaatc |
186 |
Q |
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| T |
5774017 |
atctactttattatttctcctccttttcttgcaacaagaatc |
5773976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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