View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_543 (Length: 224)
Name: NF9288A_low_543
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_543 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3316577 - 3316800
Alignment:
| Q |
1 |
agagttatgaagcttagtactaatgcaccgggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccac |
100 |
Q |
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| T |
3316577 |
agagttatgaagcttagtactaatgcaccgggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccac |
3316676 |
T |
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| Q |
101 |
gttctgcactttgtttggagagtcaagcttttcctgattcttttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcttgt |
200 |
Q |
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| T |
3316677 |
gttctgcactttgtttggagagtcaagcttttcctgattctgttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcatgt |
3316776 |
T |
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| Q |
201 |
tatgttgttgaagttttccaccaa |
224 |
Q |
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| T |
3316777 |
tatgttgttgaagttttccaccaa |
3316800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3323887 - 3324110
Alignment:
| Q |
1 |
agagttatgaagcttagtactaatgcaccgggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccac |
100 |
Q |
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| T |
3323887 |
agagttatgaagcttagtactaatgctcctggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccac |
3323986 |
T |
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| Q |
101 |
gttctgcactttgtttggagagtcaagcttttcctgattcttttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcttgt |
200 |
Q |
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| T |
3323987 |
gttctgcactttgtttggagagtcaagcttttcctgattctgttaatcatccaaaatttccttcaactattgttacaaaagaaaagccttacaagcatgt |
3324086 |
T |
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| Q |
201 |
tatgttgttgaagttttccaccaa |
224 |
Q |
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| T |
3324087 |
tatgttgttgaagttttccaccaa |
3324110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 2299662 - 2299746
Alignment:
| Q |
112 |
tgtttggagagtcaagcttttcctgattcttttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagc |
196 |
Q |
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| T |
2299662 |
tgtttggaaagtcaagcttttcctgattcagttaatcatcctaattttccttcaacaatcgtgactccagaaaaaccttataagc |
2299746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 18635543 - 18635485
Alignment:
| Q |
10 |
aagcttagtactaatgcaccgggattgcaattttatagtgctaattttgtgaagaatga |
68 |
Q |
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| T |
18635543 |
aagcttagtactaatgcttctggattgtaattttatagtgctaagtttgtgaataatga |
18635485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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