View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_545 (Length: 223)
Name: NF9288A_low_545
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_545 |
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Alignment Details
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 9462349 - 9462216
Alignment:
| Q |
77 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaac-----------------aattgttcaagttcattagttgttaatcat |
159 |
Q |
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| T |
9462349 |
cttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattatttgttaatcat |
9462250 |
T |
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| Q |
160 |
cttagtttgagatctcagaattattcactctact |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9462249 |
cttagtttgagatctcagaattattcactctact |
9462216 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 9462391 - 9462363
Alignment:
| Q |
23 |
gtcataacagaaatgatcgcttagcgagc |
51 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9462391 |
gtcataacagaaatgatcgcttagcgagc |
9462363 |
T |
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