View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_549 (Length: 221)
Name: NF9288A_low_549
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_549 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 36172856 - 36172638
Alignment:
| Q |
4 |
gactgatatgaatgctttatgaccgaagaagtctcattcattcacaaaagcatgcagggagagggaacgttagccacacataaattagttttctttttga |
103 |
Q |
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| T |
36172856 |
gactgacatgaatgctttatgaccgaagaagtctcattcattcacaaaagcatgcagggagagggaaccttagccacacataaattagttttctttttga |
36172757 |
T |
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| Q |
104 |
caggaccacacataattagctgaaggattgtacagagaaaatgtatgaatgaattgaacttaagtggacaaataaaaccgagtaaaaac-aacatctttt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
36172756 |
caggaccacacataattagctgaaggattgtacagagaaaatgtatgaatgaattgaacttaagtggaccaataaaaccgagtaaaaacaaacatctttt |
36172657 |
T |
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| Q |
203 |
gcaaatgattacctattct |
221 |
Q |
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||||||||||||||||||| |
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| T |
36172656 |
gcaaatgattacctattct |
36172638 |
T |
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