View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_550 (Length: 221)
Name: NF9288A_low_550
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_550 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 39921073 - 39920888
Alignment:
| Q |
19 |
acttttaaggatgaaaattaactgaatggtgacttcctagttagttaaagtgactagtccatgagtccatgtacggtgtgtttctaattgtggctgaaaa |
118 |
Q |
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| T |
39921073 |
acttttaaggatgaaaattaactgaatggtgacttcctagttagttaaagtgactagtccatgagtccatgtacggtgtgtttctaattgtggctgaaaa |
39920974 |
T |
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| Q |
119 |
tgacaaaaattcaagaaattaaactaa----taatagccttcactatccaatatactacagtacttatatatgagataatcacaat |
200 |
Q |
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| T |
39920973 |
tgacaaaaattcaagaaattaaactaatacttaatagccttcactatccaaaatactacagtacttatatatgagataatcacaat |
39920888 |
T |
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