View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_553 (Length: 220)
Name: NF9288A_low_553
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_553 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 43098816 - 43098994
Alignment:
| Q |
21 |
aaactagctgtaacaatgtcaggcaaaagagacaagtttggtcagcatttaataaagttcgaaaactagaacatgtaacagactaacagcagcttgcaaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43098816 |
aaactagctgtaacaatgtcaggcaaaagagacaagtttggtcagcatttaataaagttcgaaaactagaacatgtaacagactaacagctgcttgcaaa |
43098915 |
T |
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| Q |
121 |
atgcaaaatcatatagtactactgtctaaaacttgtatgtcaggtctagctcaccatttgatgacacttacattagtat |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43098916 |
atgcaaaatcatatagtactaccgtctaaaacttgtatgtcaggtctagctcaccatttgatgacacttacattagtat |
43098994 |
T |
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