View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_554 (Length: 219)
Name: NF9288A_low_554
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_554 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 69 - 219
Target Start/End: Complemental strand, 22837942 - 22837792
Alignment:
| Q |
69 |
gagaaagaaaagaaatcataccatgaagaagccaaaacaagctaccattaaccatgtaatcaaagacaagcaatttttcatcccttgcaaaataataagc |
168 |
Q |
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| T |
22837942 |
gagaaagaaaagaaatcataccatgaagaagccaaaacaagctaccattaaccatgtaatcaaagacaagcaatttttcatcccttgcaaaataataagc |
22837843 |
T |
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| Q |
169 |
ctttaagctaacaatgttggagtgtcttaactctccaagaacttccattct |
219 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| ||||||||| |
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| T |
22837842 |
ctttaagctaacaatgttggagtgttttaactttccaagaatttccattct |
22837792 |
T |
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