View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_557 (Length: 218)

Name: NF9288A_low_557
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_557
NF9288A_low_557
[»] chr1 (8 HSPs)
chr1 (10-181)||(17560737-17560908)
chr1 (14-165)||(4366475-4366626)
chr1 (17-144)||(21855384-21855511)
chr1 (24-157)||(39379049-39379182)
chr1 (27-155)||(4570879-4571007)
chr1 (16-144)||(10218926-10219054)
chr1 (80-166)||(4014944-4015030)
chr1 (17-125)||(4016792-4016900)
[»] chr7 (17 HSPs)
chr7 (15-166)||(29874450-29874602)
chr7 (16-157)||(29859395-29859536)
chr7 (13-166)||(29921972-29922125)
chr7 (24-166)||(29867188-29867327)
chr7 (24-166)||(29881205-29881347)
chr7 (44-159)||(29454089-29454204)
chr7 (27-125)||(29445676-29445774)
chr7 (75-166)||(29430980-29431071)
chr7 (75-159)||(14076678-14076762)
chr7 (75-159)||(14386706-14386790)
chr7 (80-159)||(660833-660912)
chr7 (99-167)||(19351047-19351115)
chr7 (74-125)||(29106813-29106864)
chr7 (74-125)||(29899373-29899424)
chr7 (27-136)||(29895418-29895530)
chr7 (12-121)||(29920067-29920176)
chr7 (99-159)||(18514773-18514833)
[»] chr4 (8 HSPs)
chr4 (24-156)||(3557675-3557807)
chr4 (17-156)||(3565686-3565825)
chr4 (24-166)||(3560937-3561079)
chr4 (11-157)||(1686273-1686419)
chr4 (75-145)||(53774840-53774910)
chr4 (75-159)||(11970968-11971052)
chr4 (83-144)||(53430100-53430161)
chr4 (75-164)||(11981664-11981753)
[»] chr3 (1 HSPs)
chr3 (11-166)||(3625670-3625825)
[»] chr5 (2 HSPs)
chr5 (17-144)||(24330900-24331027)
chr5 (14-143)||(29597554-29597683)
[»] chr2 (1 HSPs)
chr2 (99-166)||(14514924-14514991)
[»] chr6 (3 HSPs)
chr6 (75-146)||(6921349-6921420)
chr6 (80-157)||(6935206-6935283)
chr6 (75-159)||(20770650-20770734)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 17560908 - 17560737
Alignment:
Q  10 catagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggtt 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  17560908 catagaaccaacttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggtt 17560809  T
Q  110 gaagattcttggactccattccttagaattagttataacgatcttcaaattgattatagctatgatggttat 181  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17560808 gaagattcttggacaccattccttataattagttataacgatcttcaaattgattatagctatgatggttat 17560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 4366626 - 4366475
Alignment:
Q  14 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 113  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||  ||||||| |||  ||||| ||| |||||||  |||||||||| ||||||||||    
T  4366626 gaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaag 4366527  T
Q  114 attcttggactccattccttagaattagttataacgatcttcaaattgatta 165  Q
    | |||||||||||||| |||| | |||||||  |  |||||||||| |||||    
T  4366526 agtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 21855511 - 21855384
Alignment:
Q  17 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 116  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  21855511 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 21855412  T
Q  117 cttggactccattccttagaattagtta 144  Q
    ||||||||| | |||||| | |||||||    
T  21855411 cttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 39379182 - 39379049
Alignment:
Q  24 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    ||||||||||||| ||||||||||||||||||||| ||||||   |||  |||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  124 tccattccttagaattagttataacgatcttcaa 157  Q
    || ||| |||| ||| |||||| | |||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 4570879 - 4571007
Alignment:
Q  27 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactcc 126  Q
    |||||||||| | ||| |||||||||||||||    ||| |||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  4570879 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 4570978  T
Q  127 attccttagaattagttataacgatcttc 155  Q
    ||| |||| |||||||||||  |||||||    
T  4570979 attgcttaaaattagttatagtgatcttc 4571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 10218926 - 10219054
Alignment:
Q  16 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 115  Q
    |||||||||||||||||||||||  || ||||||||||||| |    |||||||||  ||||| ||| |||||||  |||||||||||||| ||||||||    
T  10218926 accaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagat 10219025  T
Q  116 tcttggactccattccttagaattagtta 144  Q
    |||||||||| ||| |||| |||||||||    
T  10219026 tcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 4015030 - 4014944
Alignment:
Q  80 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||  | ||||||| ||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattat 4014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 4016900 - 4016792
Alignment:
Q  17 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 116  Q
    ||||||||| |||||||||||| ||| |||||||||||||||   || | | ||| | ||||   ||| |||||  ||||||||||||| ||||||||||    
T  4016900 ccaactattagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagatt 4016801  T
Q  117 cttggactc 125  Q
    | |||||||    
T  4016800 cctggactc 4016792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 29874450 - 29874602
Alignment:
Q  15 aaccaactattggtgtgttgggg-gactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 113  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||  ||||||||||  |||||||||||||||||||||    
T  29874450 aaccaaatataggtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaag 29874549  T
Q  114 attcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    |||||||||||||||| |||| |||||||||| |  |||||||||||||||||    
T  29874550 attcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 29859395 - 29859536
Alignment:
Q  16 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 115  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||  ||||| ||||||||| |  ||||||||||||| |||||||||    
T  29859395 accaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagat 29859494  T
Q  116 tcttggactccattccttagaattagttataacgatcttcaa 157  Q
    |||||||| ||||| |||| |||||||||| || ||||||||    
T  29859495 tcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 29922125 - 29921972
Alignment:
Q  13 agaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaa 112  Q
    |||||||||  ||||||||||||||| ||| |||||||||||||||  |||||| ||||  ||||| |||||||||||  ||||||||||||||| ||||    
T  29922125 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa 29922026  T
Q  113 gattcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    ||||||||| ||| ||||||||||||||||||| |  |||||| ||| ||||||    
T  29922025 gattcttggtctcaattccttagaattagttatcaaaatcttctaatagattat 29921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 29867188 - 29867327
Alignment:
Q  24 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    ||||||||||||||||||| |||||||||||||||  |   |||||||  |||||  ||||||||||  |||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  124 tccattccttagaattagttataacgatcttcaaattgattat 166  Q
    || ||||||||||||||||||  |  |||||||||||||||||    
T  29867285 tcaattccttagaattagttaccataatcttcaaattgattat 29867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 29881205 - 29881347
Alignment:
Q  24 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    |||||||||||| |||||| ||||| |||| |||| ||||||||||||  |||||  || | |||||  |||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  124 tccattccttagaattagttataacgatcttcaaattgattat 166  Q
    || ||||||||||||||||||  |   ||||||||||||||||    
T  29881305 tcaattccttagaattagttaccatagtcttcaaattgattat 29881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 159
Target Start/End: Complemental strand, 29454204 - 29454089
Alignment:
Q  44 ctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtt 143  Q
    |||||||||||||||  ||||||||||  |||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  29454204 ctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T
Q  144 ataacgatcttcaaat 159  Q
    || | |||||||||||    
T  29454104 atcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 29445774 - 29445676
Alignment:
Q  27 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 125  Q
    |||||||||||| ||  ||||||| |||||||  ||||||||||| ||||||  ||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactc 29445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    |||| ||||||||||   ||| ||||||||||| | ||||||||||||| | |||||||| |||||||||| | ||||||||||| ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 14076678 - 14076762
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 14386706 - 14386790
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 660912 - 660833
Alignment:
Q  80 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    |||||||||||  ||||| ||||| | |||||||| |||||||||| |||||||| |||||||||| |  ||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaat 660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 19351115 - 19351047
Alignment:
Q  99 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattata 167  Q
    ||||||| ||||| || ||||||||||||||||| | |||||||| | | |||||||| ||||||||||    
T  19351115 aatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattata 19351047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 29106813 - 29106864
Alignment:
Q  74 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 125  Q
    ||||| ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  29106813 gattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 29899373 - 29899424
Alignment:
Q  74 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 125  Q
    ||||| |||||||||||  |||||||||||||||||||||| || |||||||    
T  29899373 gattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 29895418 - 29895530
Alignment:
Q  27 gtgtgttgggggactgtctttgtttttcttatcgtt---acaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    |||| ||||| | |||||||||||||||||||  ||   ||||||||| ||| || ||| |||||||  |||||||||||||| | ||||| |||||||     
T  29895418 gtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttgggatagaagagtcttggag 29895517  T
Q  124 tccattccttaga 136  Q
    || ||| ||||||    
T  29895518 tcaattacttaga 29895530  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 29920176 - 29920067
Alignment:
Q  12 tagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttga 111  Q
    ||||||||||| ||||||||||||| | ||| |||| || |||||||  ||||||||||| ||| ||  | |||||| |  |||||||||| ||  ||||    
T  29920176 tagaaccaactcttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttga 29920077  T
Q  112 agattcttgg 121  Q
    | ||||||||    
T  29920076 atattcttgg 29920067  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 18514833 - 18514773
Alignment:
Q  99 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    ||||||| |||||| | |||||||||| |||||||| |||||||||||   ||||||||||    
T  18514833 aatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaaat 18514773  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 3557675 - 3557807
Alignment:
Q  24 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  124 tccattccttagaattagttataacgatcttca 156  Q
    || ||| |||| |||||||||| | ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttca 3557807  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 3565686 - 3565825
Alignment:
Q  17 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 116  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||| ||| ||| ||||||  ||||||||||  ||||| |||||||||||||||| |    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  117 cttggactccattccttagaattagttataacgatcttca 156  Q
    ||||||||| ||| |||| |||||||||| | ||||||||    
T  3565786 cttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 3561079 - 3560937
Alignment:
Q  24 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 123  Q
    ||||||| |||||||| || |||||||||||||||  ||||||||||| ||||||  |||| |||||  |||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  124 tccattccttagaattagttataacgatcttcaaattgattat 166  Q
    || ||| |||| |||||||||| | ||||||||| | ||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttcaattagattat 3560937  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 1686419 - 1686273
Alignment:
Q  11 atagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttg 110  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||  ||| |||   | | || |  ||||||||||  ||||| ||||||| ||||    
T  1686419 atagagccaactgttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttg 1686320  T
Q  111 aagattcttggactccattccttagaattagttataacgatcttcaa 157  Q
    | || |||||||||| ||| |||| |  ||||||| | |||||||||    
T  1686319 acgagtcttggactcaatttcttaaatatagttattatgatcttcaa 1686273  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 53774840 - 53774910
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttat 145  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| |||||||| ||||||||||    
T  53774840 attttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 11971052 - 11970968
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    |||| |||||||||||  ||||| ||||||| || ||||| |||||||||| ||| ||||||||||||||| |  ||||||||||    
T  11971052 attttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaat 11970968  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  83 atatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtta 144  Q
    ||||||||  ||||||||| |||||  |||||||||||||||| |||||||| |||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 11981753 - 11981664
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgatt 164  Q
    |||| |||||||||||  ||||| ||||||| || ||||| || ||||||| ||| |||| ||||||||||    |||||||||||||||    
T  11981753 attttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgatt 11981664  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 3625670 - 3625825
Alignment:
Q  11 atagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttg 110  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||||  |||||||| || | || |  ||||||||||  ||||||||||||||||||    
T  3625670 atagaaccaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttg 3625769  T
Q  111 aagattcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    |||| |||||||||| ||| |||| |||||||||| |  |||||||| | ||||||    
T  3625770 aagagtcttggactcaatttcttaaaattagttatcaaaatcttcaattagattat 3625825  T

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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 24331027 - 24330900
Alignment:
Q  17 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 116  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  24331027 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 24330928  T
Q  117 cttggactccattccttagaattagtta 144  Q
    ||||||||| | |||||| | |||||||    
T  24330927 cttggactcaactccttaaagttagtta 24330900  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 29597683 - 29597554
Alignment:
Q  14 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 113  Q
    ||||||||||||| ||| |||  |||| | |||||||||||| | | || ||||||||   |||| |||||||||||  |||   ||||||| ||||||     
T  29597683 gaaccaactattgctgttttgctggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaac 29597584  T
Q  114 attcttggactccattccttagaattagtt 143  Q
    | |||||||||| |||||||| ||||||||    
T  29597583 aatcttggactcaattccttaaaattagtt 29597554  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 14514924 - 14514991
Alignment:
Q  99 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 166  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||||||| ||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttata 146  Q
    |||| ||||| |||||  ||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 6935283 - 6935206
Alignment:
Q  80 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaa 157  Q
    ||||| |||||  ||||| ||||||| ||| |||| |||||||||  |||||||| ||||||||||| | ||||||||    
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 6935206  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 20770650 - 20770734
Alignment:
Q  75 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 159  Q
    |||| |||||||||||  ||||| |||||||  ||||||| || |||| || |||||||| |||||||||| |  ||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaat 20770734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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