View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_559 (Length: 217)
Name: NF9288A_low_559
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_559 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 47446417 - 47446582
Alignment:
| Q |
20 |
attaagtgttacatatggaacgaacaaatattgttgcttcttagtggtgttttttcgagttaataattataatcacagtattatatctactggatttgtg |
119 |
Q |
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| T |
47446417 |
attaagtgttacatatggaacaaacaaatatcgtttcttcttagtggtgttttctcgagttaataattataatcacaatattatatctactggatttgtg |
47446516 |
T |
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| Q |
120 |
tgagaannnnnnngtctttggatttgtgtgataatgatatgggactagccctctcattttcaagtt |
185 |
Q |
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| T |
47446517 |
tgagaatttttttgtctttggatttgtgtgataatgatatgggattaaccctttcattttcaagtt |
47446582 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 47447364 - 47447269
Alignment:
| Q |
30 |
acatatggaacgaacaaatattgttgcttcttagtggtgttttttcgagttaataattataatcacagtattatatctactggatttgtgtgagaa |
125 |
Q |
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| T |
47447364 |
acatatgaaacgaacaaatatcattgccccttagttgtgttttttggagttactaagcataatcacagttttatatttactggatttgggtgagaa |
47447269 |
T |
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