View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_560 (Length: 216)
Name: NF9288A_low_560
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_560 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 28097389 - 28097224
Alignment:
| Q |
29 |
ctgctggccttccattggccttggaaatattaggttcaaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcc |
128 |
Q |
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| T |
28097389 |
ctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcc |
28097290 |
T |
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| Q |
129 |
tagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgt |
194 |
Q |
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| T |
28097289 |
tagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgt |
28097224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 29827263 - 29827378
Alignment:
| Q |
70 |
ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg |
169 |
Q |
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| T |
29827263 |
ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg |
29827362 |
T |
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| Q |
170 |
ctttggaggaagatga |
185 |
Q |
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| T |
29827363 |
ctttggaggaagatga |
29827378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 27697509 - 27697379
Alignment:
| Q |
52 |
gaaatattaggttcaaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatac |
151 |
Q |
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| T |
27697509 |
gaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatac |
27697410 |
T |
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| Q |
152 |
ttcgtgtgagttttgatgctttggaggaaga |
182 |
Q |
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| T |
27697409 |
ttagagtgagctatgatgctttggaagaaga |
27697379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 28186633 - 28186699
Alignment:
| Q |
32 |
ctggccttccattggccttggaaatattaggttcaaacttgtatggaaagcatatagaagaatggaa |
98 |
Q |
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| T |
28186633 |
ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaa |
28186699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 29842897 - 29842785
Alignment:
| Q |
70 |
ttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg |
169 |
Q |
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| T |
29842897 |
ttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatg |
29842798 |
T |
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| Q |
170 |
ctttggaggaaga |
182 |
Q |
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||||||||||||| |
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| T |
29842797 |
ctttggaggaaga |
29842785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 3280898 - 3281048
Alignment:
| Q |
32 |
ctggccttccattggccttggaaatattaggttcaaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctag |
131 |
Q |
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|||||||||||||||| || ||| |||||||||| ||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
3280898 |
ctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaaggattcctaa |
3280997 |
T |
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| Q |
132 |
tgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga |
182 |
Q |
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| T |
3280998 |
taaagagattcagaagatacttaaagtgagttttgatgctttggaggaaga |
3281048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 16692106 - 16692268
Alignment:
| Q |
32 |
ctggccttccattggccttggaaatattaggttcaaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctag |
131 |
Q |
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||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| ||| || |||||||||||| | |||||| | |
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| T |
16692106 |
ctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatggattcctgg |
16692205 |
T |
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| Q |
132 |
tgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgt |
194 |
Q |
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| T |
16692206 |
taaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgt |
16692268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 57235 - 57082
Alignment:
| Q |
34 |
ggccttccattggccttggaaatattaggttcaaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtg |
133 |
Q |
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||||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| ||| || ||| |||||||| ||||| | | |
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| T |
57235 |
ggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccatta |
57136 |
T |
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| Q |
134 |
aagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgaga |
187 |
Q |
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| T |
57135 |
aaaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgaga |
57082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 31906371 - 31906448
Alignment:
| Q |
110 |
atcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgaga |
187 |
Q |
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|||||||||||| ||||| | | ||||||| ||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
31906371 |
atcgatatgaaatcattccaaataaagagatccaaaatatactcaaagtaagttttgatgctttggaggaagatgaga |
31906448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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