View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_561 (Length: 216)
Name: NF9288A_low_561
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_561 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 54978325 - 54978146
Alignment:
| Q |
20 |
tcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatgcttgtccaaaccgt |
119 |
Q |
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| T |
54978325 |
tcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatagcacatctagaactttttgccccggccatatgtggatggttgtccaaaccgt |
54978226 |
T |
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| Q |
120 |
tactcaactttctacgcttatggtt---gtcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtc |
196 |
Q |
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| T |
54978225 |
tactcaactttctacgcttatggttgcagtcgaatctttctggcgaatccattggttggttatcaggagttggtggtgtc |
54978146 |
T |
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