View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_565 (Length: 215)
Name: NF9288A_low_565
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_565 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 39578555 - 39578749
Alignment:
| Q |
21 |
atcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaac |
120 |
Q |
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| T |
39578555 |
atcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaac |
39578654 |
T |
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| Q |
121 |
cattaactaaggggcgaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttga |
215 |
Q |
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| T |
39578655 |
cattaactaaggggggaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttga |
39578749 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 39542302 - 39542381
Alignment:
| Q |
136 |
gaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttga |
215 |
Q |
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| T |
39542302 |
gaaacaaggacaaaacagagaaatgaggtattgaaaaaacagctcatggagacacttgcgtgttgattgttgtaccttga |
39542381 |
T |
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