View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_566 (Length: 215)
Name: NF9288A_low_566
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_566 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 7627525 - 7627372
Alignment:
| Q |
42 |
gaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaagaac |
141 |
Q |
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| T |
7627525 |
gaatccaatgaccttaccactttttccattaatgaactgcaaagcaattttcttgttcaagaagcaagaatgacacttcacaagaaaaaggaagaagaac |
7627426 |
T |
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| Q |
142 |
aactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
195 |
Q |
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| T |
7627425 |
aactcttgaaggtgtcaaattcaagaagaggaagaactggagatggtggtttta |
7627372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 8921246 - 8921399
Alignment:
| Q |
42 |
gaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatgacacttcacaagaaaaaggaagaagaac |
141 |
Q |
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| T |
8921246 |
gaatccaatgatgttaccgctttttccattaatgaactgcaaagcaattttcttgttcaagaagcatgaatgacacttcacaagaaaaaggaagaagaac |
8921345 |
T |
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| Q |
142 |
aactcttgaaggtgtcaaattcaagaagaggaagaactgaagatggtggtttta |
195 |
Q |
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| T |
8921346 |
aactcttgaaggtgtcaaattcaagaagaggaagagctggagatggtggtttta |
8921399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 35372164 - 35372092
Alignment:
| Q |
42 |
gaatccaatgacgttaccactttttccattaatgaactgcaaagcaattttcttgtccaagaagcaagaatga |
114 |
Q |
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| T |
35372164 |
gaatctaatgatgttaccactctttctattgatgaactgcaatgcagattacttgtgcaagaagcaagaatga |
35372092 |
T |
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