View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_574 (Length: 213)
Name: NF9288A_low_574
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_574 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 38145217 - 38145409
Alignment:
| Q |
21 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
120 |
Q |
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| T |
38145217 |
atttcatacaacaatttacactccaaatgaaccttcattcgcaaccatccttgattccttagcaatgaacctaaggtgtttggcaccatctacaccgaaa |
38145316 |
T |
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| Q |
121 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagt |
213 |
Q |
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| T |
38145317 |
cccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttggaatccatctaagagtaagaagt |
38145409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 11787533 - 11787411
Alignment:
| Q |
91 |
ctaaggtgtttggcaccatctacaccgaaacccgaattcatattcacaccctcccaagattcccatgtccaagcagccgtaatttgctccaagaaacttg |
190 |
Q |
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| T |
11787533 |
ctaaggtatttggtaccttctgctccaaaacccgaattcatattcacacccttaaccgattcacatgtccaagtagctgttacttgttcaaagaaacttg |
11787434 |
T |
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| Q |
191 |
gaatccatctaagagtaagaagt |
213 |
Q |
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| T |
11787433 |
gtattcatctaagagtaagaagt |
11787411 |
T |
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