View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_58 (Length: 402)

Name: NF9288A_low_58
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_58
NF9288A_low_58
[»] chr4 (19 HSPs)
chr4 (151-400)||(17451107-17451353)
chr4 (20-141)||(52741386-52741507)
chr4 (20-141)||(42777709-42777830)
chr4 (27-141)||(19164456-19164571)
chr4 (20-140)||(18107104-18107225)
chr4 (20-141)||(30274360-30274483)
chr4 (20-141)||(449521-449643)
chr4 (20-141)||(34322867-34322989)
chr4 (64-140)||(42822915-42822991)
chr4 (20-141)||(53487501-53487623)
chr4 (68-140)||(31863737-31863809)
chr4 (68-140)||(34005365-34005437)
chr4 (27-141)||(10563864-10563979)
chr4 (64-141)||(12881278-12881356)
chr4 (27-141)||(29213535-29213652)
chr4 (64-141)||(1844851-1844929)
chr4 (27-140)||(53779514-53779630)
chr4 (20-140)||(55854278-55854386)
chr4 (323-371)||(9394373-9394420)
[»] chr8 (11 HSPs)
chr8 (156-399)||(14378941-14379192)
chr8 (20-140)||(8446718-8446839)
chr8 (64-140)||(10584008-10584084)
chr8 (64-140)||(29470789-29470866)
chr8 (68-141)||(17658302-17658376)
chr8 (64-141)||(31082200-31082278)
chr8 (68-122)||(45256422-45256476)
chr8 (73-137)||(26030965-26031029)
chr8 (68-140)||(10267576-10267649)
chr8 (318-362)||(5322840-5322883)
chr8 (73-140)||(36156625-36156693)
[»] chr1 (14 HSPs)
chr1 (20-141)||(40292633-40292754)
chr1 (27-141)||(9903820-9903935)
chr1 (27-141)||(30111479-30111594)
chr1 (68-141)||(10722509-10722582)
chr1 (20-141)||(17707466-17707588)
chr1 (68-140)||(10711701-10711773)
chr1 (73-141)||(1395036-1395104)
chr1 (68-140)||(25592071-25592143)
chr1 (64-141)||(41061738-41061815)
chr1 (64-141)||(47107257-47107335)
chr1 (27-140)||(49968797-49968912)
chr1 (67-141)||(12173675-12173750)
chr1 (324-367)||(19050088-19050130)
chr1 (68-141)||(47586790-47586865)
[»] chr7 (12 HSPs)
chr7 (20-141)||(34231169-34231291)
chr7 (20-141)||(29114097-29114219)
chr7 (37-140)||(20037566-20037670)
chr7 (27-139)||(24752890-24753003)
chr7 (27-141)||(18654387-18654504)
chr7 (26-141)||(20047685-20047802)
chr7 (68-141)||(7459267-7459341)
chr7 (68-141)||(4076743-4076818)
chr7 (76-141)||(23397267-23397332)
chr7 (77-122)||(28060066-28060111)
chr7 (68-140)||(46177725-46177797)
chr7 (68-140)||(10282419-10282492)
[»] chr6 (7 HSPs)
chr6 (27-140)||(6831486-6831600)
chr6 (27-141)||(17079746-17079861)
chr6 (20-118)||(9199800-9199898)
chr6 (64-141)||(11061447-11061525)
chr6 (68-140)||(26526001-26526073)
chr6 (37-140)||(17874367-17874471)
chr6 (320-373)||(22795628-22795680)
[»] chr3 (18 HSPs)
chr3 (20-141)||(33121865-33121987)
chr3 (67-140)||(1764603-1764676)
chr3 (20-133)||(36634916-36635030)
chr3 (27-141)||(11639436-11639551)
chr3 (16-140)||(25341878-25342004)
chr3 (64-141)||(32233672-32233750)
chr3 (68-140)||(8695488-8695560)
chr3 (68-140)||(9047375-9047447)
chr3 (68-141)||(26845340-26845413)
chr3 (68-141)||(43122275-43122349)
chr3 (84-137)||(50543693-50543747)
chr3 (76-140)||(19221599-19221664)
chr3 (68-140)||(49500930-49501003)
chr3 (64-141)||(32093505-32093583)
chr3 (64-140)||(47536740-47536817)
chr3 (68-141)||(46664947-46665021)
chr3 (320-368)||(22974731-22974778)
chr3 (112-140)||(54559076-54559104)
[»] chr2 (7 HSPs)
chr2 (20-140)||(3000296-3000417)
chr2 (20-140)||(7075583-7075704)
chr2 (27-140)||(9393007-9393122)
chr2 (96-140)||(1379570-1379614)
chr2 (68-141)||(18704391-18704465)
chr2 (68-141)||(22295927-22296001)
chr2 (68-133)||(24314021-24314086)
[»] chr5 (9 HSPs)
chr5 (20-140)||(4416248-4416369)
chr5 (64-141)||(6048706-6048784)
chr5 (74-141)||(27895375-27895442)
chr5 (27-141)||(4922704-4922819)
chr5 (68-140)||(20209317-20209389)
chr5 (64-140)||(34875030-34875107)
chr5 (64-141)||(7001355-7001433)
chr5 (64-141)||(8891965-8892043)
chr5 (77-141)||(40089806-40089872)
[»] scaffold0007 (1 HSPs)
scaffold0007 (68-140)||(181600-181672)
[»] scaffold0481 (1 HSPs)
scaffold0481 (16-141)||(1343-1469)
[»] scaffold0227 (1 HSPs)
scaffold0227 (68-141)||(8385-8458)
[»] scaffold0765 (1 HSPs)
scaffold0765 (37-140)||(1353-1455)
[»] scaffold0308 (1 HSPs)
scaffold0308 (64-141)||(11549-11627)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 151 - 400
Target Start/End: Complemental strand, 17451353 - 17451107
Alignment:
Q  151 ttcaagattttttaagaaggaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgtaacttttaatagcttcgttaataatata 250  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17451353 ttcaagattttttaag---gaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgtaacttttaatagcttcgttaataatata 17451257  T
Q  251 aactctaaagagcaatgagtacatttgttgtcctcaattctctcattcattaatgattcatcaatcctttgcaaaacaacaacaagctataattgtccct 350  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||| ||||    
T  17451256 aactctaaagagcaatgagtacatttgttgtcctcgattctctcattcattaatgatccatcaaccctctgcaaaacaacagcaagctataattgcccct 17451157  T
Q  351 ttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17451156 ttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgaca 17451107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 52741386 - 52741507
Alignment:
Q  20 catcacataatggtttgtttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaat 119  Q
    |||||| ||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52741386 catcacttaatggtttgtttggttgtttgtatgactctttatttatagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaat 52741485  T
Q  120 ataattccatttttgattgttc 141  Q
    |||||| |||||||||||||||    
T  52741486 ataatttcatttttgattgttc 52741507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 42777830 - 42777709
Alignment:
Q  20 catcacataatggtttgtttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaat 119  Q
    |||||| ||||||||||||||||  ||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  42777830 catcacgtaatggtttgtttggtggtttgtatgactctttatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattatt 42777731  T
Q  120 ataattccatttttgattgttc 141  Q
    ||||||||||||||| ||||||    
T  42777730 ataattccatttttgtttgttc 42777709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 19164571 - 19164456
Alignment:
Q  27 taatggtttg-tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    |||||||||| ||||||| ||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  19164571 taatggtttgctttggttgtttgtatgactctatgtttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataatt 19164472  T
Q  126 ccatttttgattgttc 141  Q
    ||||||||||||||||    
T  19164471 ccatttttgattgttc 19164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 18107104 - 18107225
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  18107104 catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaa 18107203  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||| ||||||    
T  18107204 tataattccattttttattgtt 18107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 30274360 - 30274483
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnn-gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgatta 117  Q
    |||||| ||||||||||||| |||| ||||||||||||        ||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  30274360 catcacgtaatggtttgttttggttgtttgtatgactctaagttttgtagagtagctcttttggcacatcttatgctagaagagttgcttttggtgatta 30274459  T
Q  118 atataattccatttttgattgttc 141  Q
    ||||||||||||||||||||||||    
T  30274460 atataattccatttttgattgttc 30274483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 449643 - 449521
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       ||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||    
T  449643 catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttggcacatcttatgctggaagagttgcttttcgtgattaa 449544  T
Q  119 tataattccatttttgattgttc 141  Q
    ||||||||||||||| |||||||    
T  449543 tataattccattttttattgttc 449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 34322867 - 34322989
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||| ||||||||       ||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |    
T  34322867 catcacgtaatggtttgttttggttgtttatatgactctaagtttgtagagtagctcttttggcacaccttgtgctagaagagttgtttttggtgattta 34322966  T
Q  119 tataattccatttttgattgttc 141  Q
    ||||||||||||||| |||||||    
T  34322967 tataattccattttttattgttc 34322989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 42822991 - 42822915
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42822991 gtagagtagctcttttggcacactttgtgctagaagagttgcttttggtgatttatataattccatttttgattgtt 42822915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 53487501 - 53487623
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||| |    
T  53487501 catcacgtaatggtttgttttggttgtttgtatgactctatgtttgtagagtaattcttttggcacatcttgtgctagaagagttgctttttgtgattta 53487600  T
Q  119 tataattccatttttgattgttc 141  Q
    ||||||||||||| | |||||||    
T  53487601 tataattccatttcttattgttc 53487623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 31863809 - 31863737
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  31863809 agtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 31863737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 34005437 - 34005365
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  34005437 agtagttcttatggcacaccttatactagaagagttgcttttggtggttaatataattccatttttgtttgtt 34005365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 10563864 - 10563979
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-at 124  Q
    ||||||||||||| |||| ||||||||||||       ||| |||| ||||| ||||||||||||||||||  ||||||||||||||| |||||||| ||    
T  10563864 taatggtttgttttggttgtttgtatgactctgttcttgta-agtaattcttctggcacaccttatgctaggggagttgcttttggtgtttaatatatat 10563962  T
Q  125 tccatttttgattgttc 141  Q
    |||||||||||||||||    
T  10563963 tccatttttgattgttc 10563979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 12881278 - 12881356
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgttc 141  Q
    ||||||||| |||||||| ||||||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  12881278 gtagagtagctcttttggtacaccttgtgctagaggagttgcttttggtggttaatataaattccattgttgattgttc 12881356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 29213535 - 29213652
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtg-attaatata-a 123  Q
    ||||||||||||| |||| ||||||||||||       ||| |||| || |||||||||||||||| |||| ||||||||||||||||  |||||||| |    
T  29213535 taatggtttgttttggttgtttgtatgactctcttcttgtaaagtaattattttggcacaccttatactaggagagttgcttttggtgttttaatatata 29213634  T
Q  124 ttccatttttgattgttc 141  Q
    ||||||||||||||||||    
T  29213635 ttccatttttgattgttc 29213652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 1844851 - 1844929
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgttc 141  Q
    ||||||||| |||||||||||||||| ||||||| |||||| ||||| || ||||||| |||||||||||| |||||||    
T  1844851 gtagagtagctcttttggcacaccttgtgctagaggagttgtttttgatggttaatataaattccattttttattgttc 1844929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 53779630 - 53779514
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtg-attaatata-a 123  Q
    ||||||||||||| |||| |||||||||||        ||| |||| ||||||||||||||||| |||||| ||||||||||||||||  |||||||| |    
T  53779630 taatggtttgttttggttgtttgtatgactatgttcttgtaaagtaattcttttggcacaccttgtgctaggagagttgcttttggtgttttaatatata 53779531  T
Q  124 ttccatttttgattgtt 140  Q
    || ||||||| ||||||    
T  53779530 tttcattttttattgtt 53779514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 55854386 - 55854278
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       |||||||||||||||||||||||             ||||||||||  |||||||    
T  55854386 catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagttcttttggcacac-------------agttgcttttaatgattaa 55854300  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||||||||||    
T  55854299 tataattccatttttgattgtt 55854278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 9394373 - 9394420
Alignment:
Q  323 aaaacaacaacaagctataattgtccctttcgagccaaacaatctgaaa 371  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||| ||||    
T  9394373 aaaacaacaacaagctataattg-ccctttcgagccgaaccatcagaaa 9394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 156 - 399
Target Start/End: Complemental strand, 14379192 - 14378941
Alignment:
Q  156 gattttttaagaaggaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgta---acttttaatagcttcgttaataatataaa 252  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||  |||||| |||||||||||   | ||||||||| |||||||||||||||||    
T  14379192 gattttttaagtgggaaaagttcatgcttttattatttagaaaataatgtatgcatgcatgttttgtagtaagttttaatagtttcgttaataatataaa 14379093  T
Q  253 ctctaaagagcaatgagtacatttgttgtcctcaattctctcattcattaatgattcatcaatcctttg-----caaaacaacaacaagctataattgtc 347  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||  || ||     |||||||||| |||| |||||||| |    
T  14379092 ctctatagagcaatgagtgcatttgttgtcctcgattctctcattcattgatgatccatcaactctctgcaaaacaaaacaacagcaagttataattgac 14378993  T
Q  348 cctttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgac 399  Q
    |||||| || ||||||||||||||||||| | ||||||||||| ||||||||    
T  14378992 cctttcaagtcaaacaatctgaaacagatcttttagaacacgatgtcgtgac 14378941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 8446718 - 8446839
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       ||||||||| ||||| |||||||||| ||| |||||||||||||||| |||||||    
T  8446718 catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagctctttcggcacaccttgtgccagaagagttgcttttgatgattaa 8446817  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||||||||||    
T  8446818 tataattccatttttgattgtt 8446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 10584008 - 10584084
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10584008 gtagagtagctcttttggcacaccttgtgctagaagagttgcttttggtgattaatataatttcatttttgattgtt 10584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 29470789 - 29470866
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    ||||||||| |||||||||||||||||||||| | ||| ||||||||||| |||||||| ||| ||||||| ||||||    
T  29470789 gtagagtagctcttttggcacaccttatgctacaggagctgcttttggtggttaatatatatttcattttttattgtt 29470866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 17658376 - 17658302
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||| |||||||||||||||| ||||| | ||| ||||||||||| |||||||| |||||||||||| ||||||    
T  17658376 agtagctcttttggcacaccttgtgctacaggagctgcttttggtggttaatatatattccatttttggttgttc 17658302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 31082200 - 31082278
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgttc 141  Q
    ||||||||| |||||||||||||||| ||||| |  ||||| |||||||| ||||||| |||||||||||| |||||||    
T  31082200 gtagagtagctcttttggcacaccttgtgctacataagttgtttttggtggttaatataaattccattttttattgttc 31082278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 45256422 - 45256476
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata 122  Q
    |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||    
T  45256422 agtagttcttttggcacaccttgtgctagaggagttgtttttggtggttaatata 45256476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 26031029 - 26030965
Alignment:
Q  73 ttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgatt 137  Q
    ||||||| ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  26031029 ttcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatatattccatttttgatt 26030965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 10267649 - 10267576
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| ||| ||||||||||||| ||||||| |||||  |||||||||||| |||| ||||||||||| ||||||    
T  10267649 agtaattcctttggcacaccttgtgctagaggagttatttttggtgattattatatattccattttttattgtt 10267576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 5322883 - 5322840
Alignment:
Q  318 tttgcaaaacaacaacaagctataattgtccctttcgagccaaac 362  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  5322883 tttgcaaaacaacaacaagctataatt-ttcctttcgagtcaaac 5322840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 36156693 - 36156625
Alignment:
Q  73 ttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    ||||||||||||| ||| | ||||||||||| ||||| ||| |||||||| ||| |||||||| |||||    
T  36156693 ttcttttggcacatcttgtactagaagagttactttttgtggttaatatatatttcatttttgcttgtt 36156625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 40292633 - 40292754
Alignment:
Q  20 catcacataatggtttgtttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaat 119  Q
    |||||| ||||||||||||||||| ||||| ||||||       |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40292633 catcacgtaatggtttgtttggttgtttgtttgactctttatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaat 40292732  T
Q  120 ataattccatttttgattgttc 141  Q
    ||||||||||||||||||||||    
T  40292733 ataattccatttttgattgttc 40292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 9903820 - 9903935
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    ||||||||||||| |||| ||||||||||||       |||||||||||||||| ||||||||| | ||||||||||||||||||||| |||| ||||||    
T  9903820 taatggtttgttttggttgtttgtatgactctgtgtttgtagagtagttcttttagcacaccttgtactagaagagttgcttttggtggttaacataatt 9903919  T
Q  126 ccatttttgattgttc 141  Q
    ||||||||||||||||    
T  9903920 ccatttttgattgttc 9903935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 30111479 - 30111594
Alignment:
Q  27 taatggtttg-tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    |||||||||| ||| ||| ||||||||||||       ||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  30111479 taatggtttgctttagttgtttgtatgactctatggttgtaaagtagttcttttggcacaccttgtgctagaagagttgtttttgatgattaatataatt 30111578  T
Q  126 ccatttttgattgttc 141  Q
    ||||||||||||||||    
T  30111579 ccatttttgattgttc 30111594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 10722582 - 10722509
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgttc 141  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  10722582 agtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgttc 10722509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 17707588 - 17707466
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       ||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  17707588 catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttagcacaccttgtgctagaagagttgcttgtggtgattaa 17707489  T
Q  119 tataattccatttttgattgttc 141  Q
    ||||||| | |||||||||||||    
T  17707488 tataatttcttttttgattgttc 17707466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 10711701 - 10711773
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  10711701 agtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataatttcatttttgattgtt 10711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 1395036 - 1395104
Alignment:
Q  73 ttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgttc 141  Q
    ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  1395036 ttcttttggcacaccttgtgctagaagagttgtttttggtggttaatataattccatttttgattgttc 1395104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 25592071 - 25592143
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  25592071 agtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 25592143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 41061738 - 41061815
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  41061738 gtagagtaattcttttagcacaccttgtgctagaagagttgcttttggtg-ttaatatatattccatttttgattgttc 41061815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 47107257 - 47107335
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||||  |||||||| ||| |||||||||||||||    
T  47107257 gtagagtagttcttttggcacaccttgtactagaggagttgcttttggtagttaatatatatttcatttttgattgttc 47107335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 49968912 - 49968797
Alignment:
Q  27 taatggtttgtt-tggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aat 124  Q
    ||||||||| || ||||| ||||||||||||       ||| ||||| |||||| ||||||||| |||||||  |||||||||||||| ||||||| |||    
T  49968912 taatggtttcttatggttgtttgtatgactctgtgtttgtaaagtagctcttttagcacaccttgtgctagagaagttgcttttggtggttaatataaat 49968813  T
Q  125 tccatttttgattgtt 140  Q
    ||||||||||||||||    
T  49968812 tccatttttgattgtt 49968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 12173750 - 12173675
Alignment:
Q  67 gagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||| ||||||||||||| ||| ||||||| |||||| |||| ||| |||||||| |||||||||||| ||||||    
T  12173750 gagtaattcttttggcacatcttgtgctagaggagttgttttttgtggttaatatatattccatttttgtttgttc 12173675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 19050130 - 19050088
Alignment:
Q  324 aaacaacaacaagctataattgtccctttcgagccaaacaatct 367  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  19050130 aaacaacaacaagctataatt-tccctttcgagccaaaccatct 19050088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 47586865 - 47586790
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagtt-gcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||| ||||||||||||| || |||| ||||| |||||||||| |||||||| |||||||||||| ||||||    
T  47586865 agtaattcatttggcacaccttgtgttagaggagtttgcttttggtggttaatatatattccatttttgtttgttc 47586790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 34231291 - 34231169
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||||||||||||||||| |||| ||||||||||||       ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  34231291 catcacataatggtttgttttggttgtttgtatgactctaaatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa 34231192  T
Q  119 tataattccatttttgattgttc 141  Q
    |||||||||||||||||||||||    
T  34231191 tataattccatttttgattgttc 34231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 29114097 - 29114219
Alignment:
Q  20 catcacataatggtttgtt-tggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||| |||||| ||||| ||||||||||||        |||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  29114097 catcacgtaatgatttgttatggttgtttgtatgactctaaatttttagagtagctcttttggcacaccttgtgctagaatagttgcttttggtgattaa 29114196  T
Q  119 tataattccatttttgattgttc 141  Q
    |||||||||||||||||||||||    
T  29114197 tataattccatttttgattgttc 29114219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 20037566 - 20037670
Alignment:
Q  37 tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttga 135  Q
    ||||||| ||||||||||||       ||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  20037566 tttggttgtttgtatgactctatgtttgtaaagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccatttttga 20037665  T
Q  136 ttgtt 140  Q
    |||||    
T  20037666 ttgtt 20037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 24753003 - 24752890
Alignment:
Q  27 taatggtttgtttgg-ttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    ||||||||||||| | || ||||||||||||       ||| |||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||    
T  24753003 taatggtttgttttgattgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgctacaagagctgcttttggtggttaatataatt 24752904  T
Q  126 ccatttttgattgt 139  Q
    | ||||||||||||    
T  24752903 ctatttttgattgt 24752890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 18654387 - 18654504
Alignment:
Q  27 taatggtttg--tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-a 123  Q
    ||||||||||  ||||||| ||||||||||||       ||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||||| || |    
T  18654387 taatggtttggttttggttgtttgtatgactctgtgtttgtaaagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatttata 18654486  T
Q  124 ttccatttttgattgttc 141  Q
    |||||||||| |||||||    
T  18654487 ttccattttttattgttc 18654504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 20047685 - 20047802
Alignment:
Q  26 ataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-a 123  Q
    |||||||||||||| |||| ||||||||||||       ||| | |||||||||||||||||||| | ||||| ||||||||||||||| |||||||| |    
T  20047685 ataatggtttgttttggttgtttgtatgactctatgtttgtaaaatagttcttttggcacaccttgtactagaggagttgcttttggtggttaatatata 20047784  T
Q  124 ttccatttttgattgttc 141  Q
    |||||||||| |||||||    
T  20047785 ttccattttttattgttc 20047802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 7459267 - 7459341
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||||| ||||||    
T  7459267 agtaattcttttggcacaccttgtgctaggggagttgcttttggtgtttaatatatattccatttttgtttgttc 7459341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 4076818 - 4076743
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagag-ttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||||||||||| ||||||| ||| |||||||||||||||| |||| ||||||||||| |||||||    
T  4076818 agtaattcttttggcacaccttgtgctagaggagtttgcttttggtgattattatatattccattttttattgttc 4076743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 23397267 - 23397332
Alignment:
Q  76 ttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||| ||||||| ||||| ||||||||| |||||||| |||||||||||||||||||    
T  23397267 ttttagcacaccttgtgctagaggagtttcttttggtg-ttaatatatattccatttttgattgttc 23397332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 28060111 - 28060066
Alignment:
Q  77 tttggcacaccttatgctagaagagttgcttttggtgattaatata 122  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||||    
T  28060111 tttgacacaccttatgctagaggagttgcttttggtgtttaatata 28060066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 46177797 - 46177725
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| ||||||| ||||||||||| ||||| |||||| ||||||||  ||||||| ||||||||||||||||||    
T  46177797 agtaattcttttagcacaccttatactagaggagttgtttttggtg-ctaatatatattccatttttgattgtt 46177725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 10282419 - 10282492
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| |||||||||||||  || ||||||| |||||| |||| ||| |||||||| |||||||||||| |||||    
T  10282419 agtaattcttttggcacattttgtgctagaggagttgttttttgtggttaatatatattccatttttgcttgtt 10282492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 6831486 - 6831600
Alignment:
Q  27 taatggtttg-tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    |||||||||| ||||||| ||||||||||||       ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6831486 taatggtttgctttggttgtttgtatgactctatggttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaatataatt 6831585  T
Q  126 ccatttttgattgtt 140  Q
    |||||||||||||||    
T  6831586 ccatttttgattgtt 6831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 17079746 - 17079861
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    ||||||||||||| |||| ||||||||||||       ||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||    
T  17079746 taatggtttgttttggttgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgctagaagagtttcttttggtggttaatataatt 17079845  T
Q  126 ccatttttgattgttc 141  Q
    ||||||||||||||||    
T  17079846 ccatttttgattgttc 17079861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 9199800 - 9199898
Alignment:
Q  20 catcacataatggtttgtttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| |||| |||||||||||| |||||| || ||       ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  9199800 catcacgtaattgtttgtttggttgtttgtacgattctttatttgtagagtagttcttttgacacaccttgtgctagaagagttgcttttggtgattaa 9199898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 11061447 - 11061525
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||| |||||||||||||||| |||||   ||| ||||||||||| ||| |||| |||||||||||||| ||||    
T  11061447 gtagagtagctcttttggcacaccttgtgctacttgagctgcttttggtggttattatatattccatttttgatcgttc 11061525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 26526073 - 26526001
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| ||||||| ||||||||| |||||||  |||||||||||||| |||||||| ||||||||||| ||||||    
T  26526073 agtaattcttttagcacaccttgtgctagagaagttgcttttggtg-ttaatatatattccattttttattgtt 26526001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 17874367 - 17874471
Alignment:
Q  37 tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttga 135  Q
    ||||||| ||||||||||||       ||| |||| ||||| ||||||| ||| || |||  ||||||||||||||| |||||||| ||||||||||| |    
T  17874367 tttggttgtttgtatgactctgttcttgtaaagtaattcttctggcacaacttgtgttaggggagttgcttttggtgtttaatatatattccatttttta 17874466  T
Q  136 ttgtt 140  Q
    |||||    
T  17874467 ttgtt 17874471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 22795628 - 22795680
Alignment:
Q  320 tgcaaaacaacaacaagctataattgtccctttcgagccaaacaatctgaaaca 373  Q
    |||||||| |||||||||||||||| ||||||||||| ||||| || |||||||    
T  22795628 tgcaaaaccacaacaagctataatt-tccctttcgagtcaaaccatttgaaaca 22795680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 33121865 - 33121987
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  33121865 catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttgacacaccttatgccagaagagttgcttttggtgattaa 33121964  T
Q  119 tataattccatttttgattgttc 141  Q
    |||||||||||||||||||||||    
T  33121965 tataattccatttttgattgttc 33121987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 1764676 - 1764603
Alignment:
Q  67 gagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  1764676 gagtagttcttttggcacaccttatgttagaagagttgcttttggtgattaatataatttcatttttgattgtt 1764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 36635030 - 36634916
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  36635030 catcacgtaatggtttgttttggttgtttgtatgactctatgtttgtagagtagttcttctggcacaccttatactaaaagagttgcttttggtgattaa 36634931  T
Q  119 tataattccattttt 133  Q
    |||||||||||||||    
T  36634930 tataattccattttt 36634916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 11639551 - 11639436
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataatt 125  Q
    ||||||||||||| ||||  |||||||||||       ||| |||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||    
T  11639551 taatggtttgttttggttggttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgcaagaagagttgattttggtggttaatataatt 11639452  T
Q  126 ccatttttgattgttc 141  Q
    ||||||||||||||||    
T  11639451 ccatttttgattgttc 11639436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 25341878 - 25342004
Alignment:
Q  16 tggacatcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtga 114  Q
    |||||||| | ||||| ||||||| |||||||||||||||||       ||| ||||||||||||||||||||||||||||||   |||||||||||||     
T  25341878 tggacatcgcttaatgatttgttttggttatttgtatgactctatgtttgtaaagtagttcttttggcacaccttatgctagagtggttgcttttggtgg 25341977  T
Q  115 ttaatata-attccatttttgattgtt 140  Q
    |||||||| ||| ||||||||||||||    
T  25341978 ttaatatatatttcatttttgattgtt 25342004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 32233672 - 32233750
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgttc 141  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||| ||||||| |||||||    
T  32233672 gtagagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatataaatttcattttttattgttc 32233750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 8695488 - 8695560
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||| |||||    
T  8695488 agtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattatatttttgtttgtt 8695560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 9047375 - 9047447
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||| |||||    
T  9047375 agtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattatatttttgtttgtt 9047447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 26845413 - 26845340
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||    
T  26845413 agtaattcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatatattccatttttgattgttc 26845340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 43122275 - 43122349
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||||||| ||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||    
T  43122275 agtaattcttttggcacatcttatgctagaggagttgctttttgtggttaatatatattccatttttgcttgttc 43122349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 50543747 - 50543693
Alignment:
Q  84 caccttatgctagaagagttgcttttggtgattaatata-attccatttttgatt 137  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  50543747 caccttatgctagaggagttgcttttgatgattaatatatattccatttttgatt 50543693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 19221664 - 19221599
Alignment:
Q  76 ttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||||||||||||| ||||||| ||||||||||||||  |||||||| ||||||||||| ||||||    
T  19221664 ttttggcacaccttgtgctagaggagttgcttttggttgttaatatatattccattttttattgtt 19221599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 49500930 - 49501003
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||| ||| |||||||| |||||||||||| |||||    
T  49500930 agtaattcttttggcacatcttgtgctagaggagttgctttttgtggttaatatatattccatttttgcttgtt 49501003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 32093505 - 32093583
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||| ||||||||||| |||| | ||| | ||| ||||||||||| |||||||| || ||||||||||||||||    
T  32093505 gtagagtagctcttttggcacgccttgtactataggagctgcttttggtggttaatatatatcccatttttgattgttc 32093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 47536817 - 47536740
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgtt 140  Q
    ||||||||| |||||||||||| ||| ||||| | ||| || |||||||| ||||||| |||||||||||| ||||||    
T  47536817 gtagagtagctcttttggcacatcttgtgctacaggagctgtttttggtggttaatataaattccattttttattgtt 47536740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 46665021 - 46664947
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||||||| ||| ||||||| ||||| ||||| ||| |||||||| |||| ||||||| ||||||    
T  46665021 agtaattcttttggcacatcttgtgctagaggagttactttttgtggttaatatatattctatttttgcttgttc 46664947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 22974778 - 22974731
Alignment:
Q  320 tgcaaaacaacaacaagctataattgtccctttcgagccaaacaatctg 368  Q
    |||||||| |||||||||||||||| | ||||||||||||||| |||||    
T  22974778 tgcaaaaccacaacaagctataatt-ttcctttcgagccaaaccatctg 22974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 54559076 - 54559104
Alignment:
Q  112 tgattaatataattccatttttgattgtt 140  Q
    |||||||||||||||||||||||||||||    
T  54559076 tgattaatataattccatttttgattgtt 54559104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 3000296 - 3000417
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3000296 catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaa 3000395  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||| ||||||    
T  3000396 tataattccattttttattgtt 3000417  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 7075704 - 7075583
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       || |||||| |||||||||||||||| |||||||||||||||||||| |||||||    
T  7075704 catcacgtaatggtttgttttggttgtttgtatgactctaattttgttgagtagctcttttggcacaccttgtgctagaagagttgcttttgatgattaa 7075605  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||| ||||||    
T  7075604 tataattccattttttattgtt 7075583  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 9393122 - 9393007
Alignment:
Q  27 taatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-at 124  Q
    ||||||||||||| |||| ||||||||||||       ||| |||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||| ||    
T  9393122 taatggtttgttttggttgtttgtatgactctatgtttgtaaagtatttcttttggcacaccttgtgctagaggagttgcttttggtggttaatatatat 9393023  T
Q  125 tccatttttgattgtt 140  Q
    | ||||||| ||||||    
T  9393022 ttcattttttattgtt 9393007  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 1379614 - 1379570
Alignment:
Q  96 gaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1379614 gaagagttgcttttggtgattaatataattccatttttgattgtt 1379570  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 18704391 - 18704465
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||| ||||||||||||| ||| ||||||| |||||||||||| || |||||||| ||||||||||| |||||||    
T  18704391 agtaattcttttggcacatcttgtgctagacgagttgcttttgatggttaatatatattccattttttattgttc 18704465  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 22295927 - 22296001
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||||||||||||||||||||| || |||| || ||||||||  || |||||||| ||| |||||||||||||||    
T  22295927 agtagttcttttggcacaccttgtgttagaggaattgcttttaatggttaatatatatttcatttttgattgttc 22296001  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 24314021 - 24314086
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccattttt 133  Q
    |||| ||| ||| ||||||||| ||||||| ||||||||||||||| |||||||| |||||||||||    
T  24314021 agtaattcgtttagcacaccttgtgctagaggagttgcttttggtg-ttaatatatattccattttt 24314086  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 4416248 - 4416369
Alignment:
Q  20 catcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaa 118  Q
    |||||| ||||||||||||| |||| ||||||||||||       ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |    
T  4416248 catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttgacacaccttgtgctagaagagttgcttttggtgattta 4416347  T
Q  119 tataattccatttttgattgtt 140  Q
    ||||||||||||||| ||||||    
T  4416348 tataattccattttttattgtt 4416369  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 6048784 - 6048706
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||    
T  6048784 gtagagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccattttttattgttc 6048706  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 27895442 - 27895375
Alignment:
Q  74 tcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgttc 141  Q
    |||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||||||    
T  27895442 tcttttggcacaccttgtgccaaaagagttgcttttggtggttaatataattccatttttgattgttc 27895375  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 4922819 - 4922704
Alignment:
Q  27 taatggtttgt-ttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-at 124  Q
    ||||||||||| |||||| ||||| ||||||       ||| |||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||    
T  4922819 taatggtttgtattggttgtttgtttgactctgtttttgtaaagtaattcttttagcacaccttatgctagaggagttgcttttggtg-ttaatatatat 4922721  T
Q  125 tccatttttgattgttc 141  Q
    |||||||||||||||||    
T  4922720 tccatttttgattgttc 4922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 20209317 - 20209389
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgtt 140  Q
    |||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||    
T  20209317 agtaattcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatatattccatttttgattgtt 20209389  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 34875030 - 34875107
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatat-aattccatttttgattgtt 140  Q
    ||||||||| |||||||||||||||| ||||| |  || ||||||||||| ||||||| |||||||||||||||||||    
T  34875030 gtagagtagctcttttggcacaccttgtgctacagaagctgcttttggtggttaatataaattccatttttgattgtt 34875107  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 7001355 - 7001433
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||| |||||||| || |||||||||| | ||| ||||||||||| |||||||| || |||||||| |||||||    
T  7001355 gtagagtagctcttttggtacgccttatgctataggagctgcttttggtggttaatatatatcccattttttattgttc 7001433  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 8892043 - 8891965
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||| ||||||||||| |||| ||||| | ||| ||||||||||| |||||||| || |||||||| |||||||    
T  8892043 gtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccattttttattgttc 8891965  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 40089872 - 40089806
Alignment:
Q  77 tttggcacaccttatgctagaagagtt-gcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||||||| ||||||| | ||| |||||||||| |||||||| ||| |||||||||||||||    
T  40089872 tttggcacaccttgtgctagaggggttcgcttttggtggttaatatatattacatttttgattgttc 40089806  T

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Target: scaffold0007 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 181672 - 181600
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgtt 140  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  181672 agtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt 181600  T

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Target: scaffold0481 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 1469 - 1343
Alignment:
Q  16 tggacatcacataatggtttgttt-ggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtga 114  Q
    |||||||||  ||||||||| ||| |||| ||||||||||||        |||||||||||||| |||||||||| ||||| |||||||| |||| ||||    
T  1469 tggacatcatgtaatggtttattttggttgtttgtatgactctatgtttatagagtagttctttcggcacaccttgtgctaaaagagttgtttttagtga 1370  T
Q  115 ttaatataattccatttttgattgttc 141  Q
    ||||||||||||||||||| |||||||    
T  1369 ttaatataattccattttttattgttc 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 8385 - 8458
Alignment:
Q  68 agtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgattgttc 141  Q
    |||||||||| ||||||  ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  8385 agtagttcttgtggcacgtcttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgttc 8458  T

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Target: scaffold0765 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 1353 - 1455
Alignment:
Q  37 tttggttatttgtatgactcnnnnnnngtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatataattccatttttgat 136  Q
    ||||||||||||||||||||       ||| |||| ||||| ||||||||||| |||||| |||||||||||||||  |||||||| ||||||||||| |    
T  1353 tttggttatttgtatgactctgttcttgta-agtaattcttctggcacaccttgtgctaggagagttgcttttggtatttaatatatttccatttttgtt 1451  T
Q  137 tgtt 140  Q
    ||||    
T  1452 tgtt 1455  T

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Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 11627 - 11549
Alignment:
Q  64 gtagagtagttcttttggcacaccttatgctagaagagttgcttttggtgattaatata-attccatttttgattgttc 141  Q
    ||||||||| ||||||||||| |||| ||||| | ||| ||||||||||| |||||||| || ||||||||||||||||    
T  11627 gtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccatttttgattgttc 11549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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