View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_582 (Length: 210)
Name: NF9288A_low_582
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_582 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 41099749 - 41099540
Alignment:
| Q |
1 |
ggttttttcatttagctcccggttgaaaagatagtgcttattgttacaagattttccaaatacgaactcaggcaaactgatcaacctagtttggaacgac |
100 |
Q |
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| T |
41099749 |
ggttttttcatttagctcccggttgaaaagatagtgcttattgttacaagattttccaaatacgaactcagggaaactgatcaacctagtttggaacgac |
41099650 |
T |
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| Q |
101 |
aatgaacacaaatgtgttgtgctctctcctttcaattgacgggaattcaattgtgagcttgttaagcttcaatgtgaatggacaacaaatgtggcgtatt |
200 |
Q |
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| T |
41099649 |
aatgaacacaaatgtgttgtgctctctactttcaattgacgggaattcaattgtgagcttgttaagcttcaatgtgaatggacaacaaatgtgtcgtatt |
41099550 |
T |
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| Q |
201 |
ctctgcttgt |
210 |
Q |
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|||||||||| |
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| T |
41099549 |
ctctgcttgt |
41099540 |
T |
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Back To:
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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 29713550 - 29713672
Alignment:
| Q |
71 |
ggcaaactgatcaacctagtttggaacgacaatgaacacaaatgtgttgtgctctctcctttcaattgacgggaattcaattgtgagcttgt--taagct |
168 |
Q |
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||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||||| ||| || ||||||||| || | ||||| |||||| |
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| T |
29713550 |
ggcaaactgatggacctagtt-ggcacgacaatgaacacaaatgtgttgtgttctctccttttgatttactggaattcaa-tgctaacttgttataagct |
29713647 |
T |
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| Q |
169 |
tcaatgtgaatggacaacaaatgtg |
193 |
Q |
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| T |
29713648 |
tcaatgtgaatggacaacaaatgtg |
29713672 |
T |
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