View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_586 (Length: 208)
Name: NF9288A_low_586
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_586 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 6359103 - 6359271
Alignment:
| Q |
24 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacat |
123 |
Q |
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| T |
6359103 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgt |
6359202 |
T |
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| Q |
124 |
tttgaatttaagctcgtccttgtaattctctctatctactactgttattatttcgttattaaatatatt |
192 |
Q |
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| T |
6359203 |
tttgaatttaagctcgtccttgtaattctctctatttactactgttattatttcgttattaaatatatt |
6359271 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 32857358 - 32857285
Alignment:
| Q |
24 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaa |
97 |
Q |
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||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| ||||||||||||||||| |
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| T |
32857358 |
gaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgagaaactgcaaa |
32857285 |
T |
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