View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_588 (Length: 206)
Name: NF9288A_low_588
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_588 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 22581886 - 22582055
Alignment:
| Q |
18 |
acatcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgtcctgataattaaaccagaaaaaaggacc |
117 |
Q |
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| T |
22581886 |
acatcgcaagtccagaacacttacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgtcctgataattaaaccagaacaaaggacc |
22581985 |
T |
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| Q |
118 |
aattagcctccaaatataaaaatttaatagggtgaaaaacaaagatacatcggcaacttttgagtataat |
187 |
Q |
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| T |
22581986 |
aattagcctccaaatataaaaattaaatagggtgaaaaacaaagatacatcagcatcttttgagtataat |
22582055 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 1780491 - 1780544
Alignment:
| Q |
39 |
aacccttggtggcatcaggcaagcgaccctctggtggtggctcaggcttgtcct |
92 |
Q |
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| T |
1780491 |
aaccctcggtagcatcaggcaagcgaccctctaatggtggctcaggcttgtcct |
1780544 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 12348718 - 12348652
Alignment:
| Q |
19 |
catcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctcaggc |
85 |
Q |
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| T |
12348718 |
catcacaaatcaagaacactaaccctttgttgcatcaagaaagcgatcatctggtggtggctcaggc |
12348652 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 25282417 - 25282354
Alignment:
| Q |
19 |
catcacaagtccagaacactaacccttggtggcatcaggcaagcgaccctctggtggtggctca |
82 |
Q |
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| T |
25282417 |
catcacaaatcaagaacactaaccctttgttgcatcaagaaagcgatcatctggtggtggctca |
25282354 |
T |
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