View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_591 (Length: 206)
Name: NF9288A_low_591
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_591 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 15420376 - 15420208
Alignment:
| Q |
21 |
atggtttgcattcaaaataaaattatttgtcttggataatggtagatccttgtagacatgcatcatttctgagatttcataatgatcttatttcaacatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15420376 |
atggtttgcattcaaaataaaattatttgtcttggataatggtagatccttgtagacatgcatcatttctgagatttcataatgatcttatttcaacatt |
15420277 |
T |
|
| Q |
121 |
ttttgttttggttaggagaaactattaataattaaaatgacgttgatagtcatcttacgacggtctctg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15420276 |
ttttgttttggttaggagaaactattaataattaaaatgacgttgatagtcatcttacgacggtctctg |
15420208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University