View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_65 (Length: 393)
Name: NF9288A_low_65
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Complemental strand, 39392444 - 39392064
Alignment:
| Q |
7 |
ataatactaaatttagacaatctaaaatcaaaaaacttccattaatatccagattaattaataggaaaatgatgaccaaaaatagacttcatagggagag |
106 |
Q |
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| T |
39392444 |
ataatactaaatttagacaatctaaaatcaaaaaacttccattaatatccagattaattaataggaaaatgatgaccaaaaatagacttcatagggagag |
39392345 |
T |
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| Q |
107 |
tatgatctataattctcttgaataaatatcattcttcaagtcacatgtaattgagtcatccaaattggtgaagggtttctaaattgcagttataggttgc |
206 |
Q |
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| T |
39392344 |
tatgatctataattctcttgtataaataccattcttcaagtcacatgtaattgagtcatccaaattggtgaagggtttctaaattgcagttataggttgc |
39392245 |
T |
|
| Q |
207 |
catatgagcaaccacaacatcatnnnnnnnnnctgcattttaaaatcttaaacattttgtttaatcaaggtttcaagctgggaattaataaatatcacca |
306 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392244 |
catatgagcaaccacaacatcat-aaaaaaaactgcattttaaaatcttaaacattttgtttaatcaaggtttcaagctgggaattaataaatatcacca |
39392146 |
T |
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| Q |
307 |
tcaatattgctacgacaacaaacctttttatcttaggcattcttttcattagcgtgataggtgcatcgggtcgtagcctcct |
388 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392145 |
ccaatatggctacgacaacaaacttttttatcttaggcattcttttcattagcgtgataggtgcatcgggtcgtagcctcct |
39392064 |
T |
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