View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_68 (Length: 389)
Name: NF9288A_low_68
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 6 - 384
Target Start/End: Original strand, 38935999 - 38936377
Alignment:
| Q |
6 |
tttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaatcgcgtcaca |
105 |
Q |
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| T |
38935999 |
tttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaaccgcgtcacc |
38936098 |
T |
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| Q |
106 |
tagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaactgtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgt |
205 |
Q |
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| T |
38936099 |
tagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaacggtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgtgt |
38936198 |
T |
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| Q |
206 |
gtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaa |
305 |
Q |
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| T |
38936199 |
gtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaa |
38936298 |
T |
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| Q |
306 |
aggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
384 |
Q |
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| T |
38936299 |
aggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 384
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
248 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
347 |
Q |
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| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
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| Q |
348 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
384 |
Q |
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| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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