View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_69 (Length: 387)
Name: NF9288A_low_69
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_69 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 51254670 - 51254302
Alignment:
| Q |
13 |
attaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgacggaagaacacaagatcgatgagcaattgaaggacaacggatacacatg |
112 |
Q |
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| T |
51254670 |
attaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgaaggaagaacacaagatcgatgagcaattgaaggacaacggatacacatg |
51254571 |
T |
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| Q |
113 |
atgtgaagattagggaggaaagtatcgtcgaagagttcgaagcaaatagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacgac |
212 |
Q |
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| T |
51254570 |
atgtgaagattagggaggaaagtatcgtcgaagagttcgaagcaaatagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacgac |
51254471 |
T |
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| Q |
213 |
ggttgatggctctgtaggtgatagtgtggaggaagagagaggttgtcggtgtgaagccgcaacagttgcatggctccggtgaggattggaagggattcat |
312 |
Q |
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| T |
51254470 |
ggttgatggctctgtaggtgatagtgtggaggaagagagaggttgtcggtgtgaagccgcaacagtcgcatggctccggtgaggattggaagggattcat |
51254371 |
T |
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| Q |
313 |
cggaatggcattggatagggcttcgtacgtggattgtcttaacggtaaccctagaaatgtagtgagagt |
381 |
Q |
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| T |
51254370 |
cggaatggcattggatagggcttcgtacgtggattgtcttaacggtaaccctagaaatgtagtgagagt |
51254302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 12008 - 11764
Alignment:
| Q |
14 |
ttaggatcggcgcaaggaggacaaaggaaagcgaaatccggcgtggacgacggaagaacacaagatcgatgagcaattgaaggacaacggatacacatga |
113 |
Q |
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| T |
12008 |
ttaggatcggcgtaaggaggacaaaggaaagcgaaatcaggcgtcgaagaaggaagaacacgagatcgatgagtaattgaaggacaacggatgcacatga |
11909 |
T |
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| Q |
114 |
tgtgaagattaggga-ggaaagtatcgtcgaagagttcgaagcaaatagggcaaaaagtgccttgttgttgtttgagaacgcagtttgtgcagaaacg-a |
211 |
Q |
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| T |
11908 |
agtgaagattaggtatggaagggttcgtcgaagagttcgaaacaaatagggaaagaagtgccttgttgttgtttgagaacgcaatttgtgcagaaacgaa |
11809 |
T |
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| Q |
212 |
cggttgatggctctgtaggtgatagtgtggaggaagagagaggtt |
256 |
Q |
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| T |
11808 |
catttgatggctctgttggtgatggcgtggaggatgagagaggtt |
11764 |
T |
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