View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_70 (Length: 386)
Name: NF9288A_low_70
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_70 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 27 - 386
Target Start/End: Original strand, 6538609 - 6538967
Alignment:
| Q |
27 |
acaaaacaactttctctctatgtaaaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
126 |
Q |
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| T |
6538609 |
acaaaacaactttctctctatgtacaacttcatgcatctatcaccaatcaattactctgctactactttcaaacacttcaattttcactctttcatggat |
6538708 |
T |
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| Q |
127 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtaaactgtaagtgaccannnnnnnaagaaaagtgaactcatttcgtgacacaat |
226 |
Q |
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| T |
6538709 |
ttttatagttttaacacaatgttatattatactattgaaatcaatgtat-ctgtaagtgaccatttttttaagaaaagtgaactcatttcgtgacacaat |
6538807 |
T |
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| Q |
227 |
attagcaaaaaggtacatgtaccttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccgcatgacttcattatcac |
326 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6538808 |
attagcaaaaaggtacatgtactttttttattacggaggaagtatatgttatgagttatgacttacactcatgacatgagccacatgacttcattatcac |
6538907 |
T |
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| Q |
327 |
atttaacattttatctactctttcttctttcaagtcttcactaatctttcactattcaat |
386 |
Q |
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| T |
6538908 |
atttaacattttatctactctttcttctttgaagtcttcactaatctgtcactattcaat |
6538967 |
T |
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