View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_73 (Length: 381)
Name: NF9288A_low_73
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 2573843 - 2574212
Alignment:
| Q |
6 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgcatttagctgggataacaaatttgttggagctcaaacactactaacacaggtattcatatt |
105 |
Q |
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| T |
2573843 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgaatttagctgggataacaaatttgttggagctcaaacattactaacacaggtattcatatt |
2573942 |
T |
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| Q |
106 |
tatagctaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
205 |
Q |
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| T |
2573943 |
tatagttaaaccattgactaccatatagcaaaactgtattctttagtaaacattagttcaaaggaaaaaattaactaattaattctaattgttttccttt |
2574042 |
T |
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| Q |
206 |
caccttttgtcgaggaattttatggcgggagggaagagttagccaagtttcagaccgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
305 |
Q |
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| T |
2574043 |
catcttttgtcaaggaattttatggcgggagggaagagttagccaagtttcagactgatgctgaatcatttatatgtgcattgatgccaggaagtagctc |
2574142 |
T |
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| Q |
306 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacattt |
375 |
Q |
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| T |
2574143 |
tctacaaattaaaacaactccaggtatacatatagactatatttaatgattgcaaagtaatagtacattt |
2574212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 2563993 - 2564094
Alignment:
| Q |
6 |
acatcacaagtaaccaaggttggagtcaagcagtgtctgcatttagctgggataacaaatttgttggagctcaaacactactaacacaggtattcatatt |
105 |
Q |
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|||||||| |||||||||||||| ||| |||| ||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||| || ||||| |
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| T |
2563993 |
acatcacagataaccaaggttggaatcaggcagcgtctgagttcagctgggataacaaatttgttggagttcaaacattactaacacaggtctttatatt |
2564092 |
T |
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| Q |
106 |
ta |
107 |
Q |
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|| |
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| T |
2564093 |
ta |
2564094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 2564217 - 2564288
Alignment:
| Q |
262 |
gatgctgaatcatttatatgtgcattgatgccaggaagtagctctctacaaattaaaacaactccaggtata |
333 |
Q |
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|||| |||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| ||| || |||||| |
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| T |
2564217 |
gatggtgaatcatttatatgtgctttgatgcaaggaagttactctctacagattaaaaaaacacctggtata |
2564288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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