View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_8 (Length: 587)
Name: NF9288A_low_8
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_8 |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 232 - 569
Target Start/End: Original strand, 38633357 - 38633694
Alignment:
| Q |
232 |
gatgaaactcgtatatttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaa |
331 |
Q |
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| T |
38633357 |
gatgaaactcatatatttatattgttctggttttcaaattatttttgtgtagtctatgaattctgtgatgctacatagttgcaaaaatttggccgaggaa |
38633456 |
T |
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| Q |
332 |
aaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcactagaagttctnnnnnnnncggtaatttaatagatttgnnnnn |
431 |
Q |
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| T |
38633457 |
aaaaatattctgagggatataaacattcaacagaaaggtgttgcttcattcaaatcgctaaaagttctgaaaaaaacggtaatttaatagattcgttttt |
38633556 |
T |
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| Q |
432 |
nnnnnctttctctcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattaggtggagt |
531 |
Q |
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| T |
38633557 |
tttttttttctttcattatgaagattggagtttctgtgtttggtattacttatattgcttttgttggaatgttgaaaacttggaacagattaggtggagt |
38633656 |
T |
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| Q |
532 |
ttttacttgaaaaattggcagaagctcctgagagaaat |
569 |
Q |
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| T |
38633657 |
ttttacttgaaaaattggcagaagctcctgagagaaat |
38633694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 38633108 - 38633335
Alignment:
| Q |
14 |
agagagcatctagattctgtgttgaatagattatactatcttcaaaaggatcggagaaaccgcgtggcgagtaaagagaagatacttatggatttatata |
113 |
Q |
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| T |
38633108 |
agagagtatctagattctatgttgaatagattacactatctacaaaaggaacggagaaaccgcgtggcgagtaaggagaagatacttagggatttatata |
38633207 |
T |
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| Q |
114 |
tggctcttgatgaattgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacaggtattttctat |
213 |
Q |
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| T |
38633208 |
tggctcttgatgagttgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatatagctattttctat |
38633307 |
T |
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| Q |
214 |
ttaatagcatgttataatgatgaaactc |
241 |
Q |
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| T |
38633308 |
ttaatagcatgttataacgatgaaactc |
38633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 103 - 389
Target Start/End: Original strand, 38637182 - 38637461
Alignment:
| Q |
103 |
ggatttatatatggctcttgatgaattgaatttcatgaacaaagcatcaaagggaggacggtttggggaaaagcctgataaaaatgttagaaaaatacag |
202 |
Q |
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| T |
38637182 |
ggatttgtatatgactcttgatcaattgaatttcataaacaaagtagcaaatggagaatggttcggggaaaagcttgataaaaatgtaagaaaaataaag |
38637281 |
T |
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| Q |
203 |
gtattttctatttaatagca-tgttataatgatgaaactcgtata-tttattttgttctggttttcaaattatttttgtgcagtctatgaattctttgat |
300 |
Q |
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| T |
38637282 |
-------ctatttaatagaatttttaatatgatgaaattaatatattttgtgttgttttgattttgaaatcgtctatgt--agtctttgaattattttaa |
38637372 |
T |
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| Q |
301 |
gctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaaatcac |
389 |
Q |
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| T |
38637373 |
gctacataggagcaaaagtttggccgaagagaaacaaattctgagggatataaagattctgcagaaagatgttgcttcattcaaatcac |
38637461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 38690013 - 38690107
Alignment:
| Q |
275 |
tttgtgcagtctatgaattctttgatgctgcatagttgcaaaaatttggctgaggaaaaacaaattctgagggctataaacattcaacagaaaga |
369 |
Q |
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| T |
38690013 |
tttgtgtagtctttgagttatttgaagctacatggaagcaaaagtttggctgaggagaaacaaattctgagggatataaaaattcaacagaaaga |
38690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 396
Target Start/End: Original strand, 38690119 - 38690152
Alignment:
| Q |
363 |
agaaagatgttgcttcgttcaaatcactagaagt |
396 |
Q |
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| T |
38690119 |
agaaagatgttgcttcattcaaatcactagaagt |
38690152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 12384 - 12449
Alignment:
| Q |
319 |
tttggctgaggaaaaacaaattctgagggctataaacattcaacagaaagatgttgcttcgttcaa |
384 |
Q |
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| T |
12384 |
tttgggtgaagaaaaacaaattctgagagatataaagattcaacagaaagatgttgcttcattcaa |
12449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 12138 - 12206
Alignment:
| Q |
65 |
cggagaaaccgcgtggcgagtaaagagaagatacttatggatttatatatggctcttgatgaattgaat |
133 |
Q |
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| T |
12138 |
cggagaaacagtgtggcgattaaagggaaaatactaagggattttaatatggctcttgatgaattgaat |
12206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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