View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_89 (Length: 367)

Name: NF9288A_low_89
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_89
NF9288A_low_89
[»] chr4 (4 HSPs)
chr4 (23-351)||(5313554-5313886)
chr4 (157-347)||(11355130-11355322)
chr4 (150-256)||(16839429-16839535)
chr4 (38-90)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (148-350)||(30737674-30737880)
chr1 (111-281)||(28451529-28451701)
[»] chr6 (1 HSPs)
chr6 (42-256)||(7499954-7500168)
[»] chr2 (3 HSPs)
chr2 (150-256)||(45495640-45495746)
chr2 (150-256)||(45503382-45503488)
chr2 (42-247)||(5986896-5987101)
[»] chr5 (2 HSPs)
chr5 (42-256)||(9504983-9505197)
chr5 (23-166)||(33050399-33050542)
[»] scaffold0014 (1 HSPs)
scaffold0014 (157-256)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  23 gtatctggatacacgatgctcaaatcacatgacatgtaaaa-agtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 121  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  122 tagaatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 221  Q
    ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  222 agtaatctcattagtataggccaattgctgcaaaatg--gctactacgaaaatggaagcacaggctataaggg-ttttttattgcaagaatagattgatc 318  Q
    |||||||||||||||| ||||||||||||||||||||    ||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  319 ttgaaggctccattgtcaaagaagagaactttc 351  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 347
Target Start/End: Complemental strand, 11355322 - 11355130
Alignment:
Q  157 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 256  Q
    |||||||| | ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| ||    
T  11355322 tgattcatgggaaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaa 11355223  T
Q  257 tggc--tactacgaaaatggaagcacaggctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 347  Q
     |||  ||||| ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355222 aggctatactatgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  150 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 249  Q
    |||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  250 tgcaaaa 256  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 11355436 - 11355384
Alignment:
Q  38 atgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgatt 90  Q
    ||||||||| ||||||||| |||||| ||| ||||| || |||||||||||||    
T  11355436 atgctcaaagcacatgacaggtaaaatgtcatggttttctgagttagatgatt 11355384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 148 - 350
Target Start/End: Original strand, 30737674 - 30737880
Alignment:
Q  148 gtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaatt 247  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30737674 gtaaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaatt 30737773  T
Q  248 gctgcaaaatgg--ctactacgaaaatggaagcacaggctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaaga 343  Q
     |||||||| ||   | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||    
T  30737774 actgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcaga 30737873  T
Q  344 gaacttt 350  Q
    |||||||    
T  30737874 gaacttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 281
Target Start/End: Complemental strand, 28451701 - 28451529
Alignment:
Q  111 tttgcaaataatagaatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtac 210  Q
    |||||| ||||||||||||| |||| | || ||| | ||||||||   ||||| | |||||||||||||||||||| ||| ||| |||| || ||||| |    
T  28451701 tttgcagataatagaatagtgtgtgctgaaggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgc 28451602  T
Q  211 caaatatgagaagtaatctcattagtataggccaattgctgcaaaatggc--tactacgaaaatggaagcaca 281  Q
     |||||||||||| ||||| || ||||| ||  ||||| ||| ||| |||  ||||| ||| |||||||||||    
T  28451601 taaatatgagaagcaatcttatgagtattggtaaattgttgccaaagggctatactatgaagatggaagcaca 28451529  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 256
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  42 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagaatagtttgtgttaaaa 141  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| | ||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  142 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 241  Q
    | | | | |||||| |||||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  242 ccaattgctgcaaaa 256  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  150 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 249  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  250 tgcaaaa 256  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  150 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 249  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  250 tgcaaaa 256  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  42 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagaatagtttgtgttaaaa 141  Q
    |||||||||||||||   || || ||||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||| ||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  142 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 241  Q
      | | | |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  242 ccaatt 247  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  42 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagaatagtttgtgttaaaa 141  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||||  ||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  142 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 241  Q
    | | | | |||||| | |||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  242 ccaattgctgcaaaa 256  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 33050399 - 33050542
Alignment:
Q  23 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 122  Q
    ||||||||||||| ||||||||||| |||| |||||| |||||||||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  123 agaatagtttgtgttaaaagaactagtaaagtattgattcatag 166  Q
    || || | || |||| || ||| | |||| || |||||||||||    
T  33050499 agtatcgattatgttgaaggaaatggtaatgtgttgattcatag 33050542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 62533 - 62632
Alignment:
Q  157 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 256  Q
    |||||||||| || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62533 tgattcataggaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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