View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_9 (Length: 560)
Name: NF9288A_low_9
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 6958665 - 6958266
Alignment:
| Q |
11 |
gattagagtatagtagagtaatgccctgatgagttgcatcaccactaattgtaactacagatgccacatcgttgacaggctttgtcaaattggttcgaat |
110 |
Q |
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| T |
6958665 |
gattagagtatagtagagtaagtacctgaagagttgcatcaccactaattgtaactacagagtccacatcattgacaggctttgtcaaattggttcgaat |
6958566 |
T |
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| Q |
111 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatggctatttttcaagagtcagaccgacaattttcaagcagaattcaaact |
210 |
Q |
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| T |
6958565 |
ctcaactttccattcaatcaacaaaagtttatggaatcacattacacctatgcctatttttcaagagtaagaccgacaattttcaagcagaattcaaact |
6958466 |
T |
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| Q |
211 |
tcaaatgacactaaaaacctacaactattcctaccatattaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
310 |
Q |
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| T |
6958465 |
tcaaatgacactaaaaacctataactattcctaccaaagtaccatccttataaaacataagccaaaaatcacaataacacttatactgatgtaatctaga |
6958366 |
T |
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| Q |
311 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattacaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
410 |
Q |
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| T |
6958365 |
aaccacaaaccaaacctgcttgaaagagagctaaaggtgttaatcaaatattgcaatataatgttacttgaaaatgaccatatcatagtaagatagattc |
6958266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 441 - 542
Target Start/End: Complemental strand, 6956893 - 6956792
Alignment:
| Q |
441 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
540 |
Q |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
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| Q |
541 |
tg |
542 |
Q |
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|| |
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| T |
6956793 |
tg |
6956792 |
T |
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