View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_90 (Length: 365)
Name: NF9288A_low_90
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_90 |
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| [»] chr8 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 42788698 - 42789043
Alignment:
| Q |
20 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42788698 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42788797 |
T |
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| Q |
120 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaactccccggagatatattcaatttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42788798 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42788897 |
T |
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| Q |
220 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagcggactcaaattcatccaacaaaacaaacctgcattcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42788898 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaacaaaacaaacctgcattcc |
42788997 |
T |
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| Q |
320 |
ctttcaaacactcaattccaacacttttcaaaccttcaattatcat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788998 |
ctttcaaacactcaattccaacacttttcaaaccttcaattatcat |
42789043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Original strand, 42798236 - 42798581
Alignment:
| Q |
20 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42798236 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42798335 |
T |
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| Q |
120 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaactccccggagatatattcaatttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42798336 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42798435 |
T |
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| Q |
220 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagcggactcaaattcatccaacaaaacaaacctgcattcc |
319 |
Q |
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| T |
42798436 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaacaaaacaaacctgcattcc |
42798535 |
T |
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| Q |
320 |
ctttcaaacactcaattccaacacttttcaaaccttcaattatcat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42798536 |
ctttcaaacactcaattccaacacttttcaaaccttcaattatcat |
42798581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 283 - 365
Target Start/End: Original strand, 34566634 - 34566716
Alignment:
| Q |
283 |
ggactcaaattcatccaacaaaacaaacctgcattccctttcaaacactcaattccaacacttttcaaaccttcaattatcat |
365 |
Q |
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||||||| |||||||||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| ||||| |
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| T |
34566634 |
ggactcatattcatccaacaaaacaaccctgcattacctttcaagcattcaattccagcacttttcaaaccttcaatgatcat |
34566716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 34566447 - 34566611
Alignment:
| Q |
96 |
catgaagttacgtattcttttcaatgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaa |
195 |
Q |
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|||||| | |||||||||||| | ||||| ||| | || | |||||||||||| ||||| || || ||||||||||| |||| ||||||||||||| |
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| T |
34566447 |
catgaaatcacgtattcttttgagtgcaagttcaagtgtttcttcactcatatttgcaaaacaaaccctaaaccaaccgggttcggaacaatgacaagaa |
34566546 |
T |
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| Q |
196 |
ctccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttc |
260 |
Q |
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| T |
34566547 |
caccctggtgaaatattaagcttaacttcattcaaaatctcattccaaagcttcaattcaccttc |
34566611 |
T |
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