View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_94 (Length: 362)
Name: NF9288A_low_94
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_94 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 34921059 - 34920720
Alignment:
| Q |
20 |
attaggtcatatatcattcaatgtgtaacccctaaaacaaaccacacctaggacacgataccacatggtaccaataagagttatttgaatggtggtccaa |
119 |
Q |
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| T |
34921059 |
attaggtcatatgtcattcaatgtgtaacccctaaaacaaaccacacctaggagacgataccacatggtaccaataagagttatttgaatggc---ctaa |
34920963 |
T |
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| Q |
120 |
tagcattaattgaatagcatgagacgtaacagaaatgtgatgagtcgattacccacgtgatcatgaactataatcaggtctaatataccatattagaatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34920962 |
tagcattaattgaatagcatgagacgtaacagaaatgtgatgagtcgattacccacgtgatcatgaactataatcaggtctgatataccatattagaatt |
34920863 |
T |
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| Q |
220 |
taggtcgagcctaaatcaactttacaaagttaacttgtcaagtgaagattgtttccacttataatacattgtttaatcatatctcatttaatattaatcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34920862 |
taggtcgagcctaaatcaactttacaaagttaacttatcaagtgaagattgtttccacttataatacattgtttaatcatatctcatttaatattaatcc |
34920763 |
T |
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| Q |
320 |
ttaactagatgaatttgt-aaatataatgaaaattggcctatg |
361 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
34920762 |
ttaactagatgaatttgtaaaatataaagaaaattggcctatg |
34920720 |
T |
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