View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_95 (Length: 359)
Name: NF9288A_low_95
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_95 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 350
Target Start/End: Original strand, 29847137 - 29847482
Alignment:
| Q |
5 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatnnnnnnnnnnnnnnnnnnnnnt |
104 |
Q |
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| T |
29847137 |
caataattatcctaatttctccaaaaacgaatctcatttgtccctaaaccttaacaaccaaaaagtttcctaatatatcacaacacaacacaacacaact |
29847236 |
T |
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| Q |
105 |
catcacactcactccaaagcacttgcttccatttccacacatttcaatggccatcaaagacaaagagaagaagctctttctttggtcatcaagaaactat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847237 |
catcacactcactccaaagcacttgcttccatttccacacatttcaatggccatcaaagacaaagagaagaagctctttctttggtcatcaagaaactat |
29847336 |
T |
|
| Q |
205 |
gctgcagaacacaaacttttcctcacaactcttctacttctctgcaccgttgccactctcttttgcttcataccttcttctttcactatctcagcttctg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29847337 |
gctgcagaacacaaacttttcctcacaactcttctacttctctgcaccattgccactctcttttgcttcataccttcttctttcactatctcagcttctg |
29847436 |
T |
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| Q |
305 |
atctcagactttgcatctcaagaatctctcaaactccaccaacacc |
350 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
29847437 |
atctcagactttgtatctcaagaatctctcaaactccaccgacacc |
29847482 |
T |
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