View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_high_5 (Length: 352)
Name: NF9288_high_5
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 334
Target Start/End: Complemental strand, 30851105 - 30850791
Alignment:
| Q |
24 |
agaaccgaaaggaatgacatgaaaccaaagcatcacattcaataagacttatactttgactttagaaagtattaatacatactcaaacattgacacaaca |
123 |
Q |
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| T |
30851105 |
agaaccgaaaggaatgacatgaaaccaaagcatcacattcaataagacttatactttgactttagaaagtactaatacatactcaaacattgacacaaca |
30851006 |
T |
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| Q |
124 |
ctgacacgtagacaccaatggtagctatatttgtcggtgtatgccgatgcactaaaatatactcaaacattgacacacaactgaca----tgtagacacc |
219 |
Q |
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| T |
30851005 |
ctaacacgtagacaccaatggtaactatatttgtcagtgtatgctgatgcactaaaatatactcaaacattgacacaggactgacatgtatgtagacacc |
30850906 |
T |
|
| Q |
220 |
aatggtaactacatttgtcagtgtgtgtcgatattagatcccataacgtgtcagacaccagacacaccttcaatctaaagtgtctttgctagatagcttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30850905 |
aatggtaactacatttgtcagtgtgtgtcgatattagaccccataacgtgtcagacacgagacacaccttcaatctaaagtgtctttgctagatagcttt |
30850806 |
T |
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| Q |
320 |
tatcactatttaaaa |
334 |
Q |
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| T |
30850805 |
tgtcactatttaaaa |
30850791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Complemental strand, 4323865 - 4323836
Alignment:
| Q |
274 |
acaccagacacaccttcaatctaaagtgtc |
303 |
Q |
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| T |
4323865 |
acaccagacacaccttcaatctaaagtgtc |
4323836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 34489285 - 34489321
Alignment:
| Q |
267 |
gtgtcagacaccagacacaccttcaatctaaagtgtc |
303 |
Q |
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| T |
34489285 |
gtgtcagacacgagacacaccttcaatctaaagtgtc |
34489321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 21968862 - 21968897
Alignment:
| Q |
265 |
acgtgtcagacaccagacacaccttcaatctaaagt |
300 |
Q |
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| T |
21968862 |
acgtgtcagacaccagacacgccttcaatctaaagt |
21968897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 39424572 - 39424608
Alignment:
| Q |
267 |
gtgtcagacaccagacacaccttcaatctaaagtgtc |
303 |
Q |
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||||||||||||| |||||||| |||||||||||||| |
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| T |
39424572 |
gtgtcagacaccaaacacacctccaatctaaagtgtc |
39424608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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