View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_1 (Length: 838)
Name: NF9288_low_1
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 168 - 509
Target Start/End: Complemental strand, 16401592 - 16401251
Alignment:
| Q |
168 |
atataatacgtaccctatgtcaattgcatttggaaccnnnnnnnntaaatcttaatgtccttattattacattccagttagagaaagcttcttattgcat |
267 |
Q |
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| T |
16401592 |
atataatacgtaccctatgtcaattgcatttggaaccaaaaaaaataaatcttaatgtccttattattacattccagttagagaaagcttcttattgcat |
16401493 |
T |
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| Q |
268 |
caaatgcttctttttggagaacgtgatgggtattcaatggtaacttccctgcataatgaatacagaacatctttgaggtgcactataagatgtgacaagt |
367 |
Q |
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| T |
16401492 |
caaatgcttctttttggagaacgtgatgggtattcaatggtaactttcctgcataatgaatacagaacatctttgaggtgcacgataagatgtgacaagt |
16401393 |
T |
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| Q |
368 |
gactcaggaaggctattttgatcttcaacttcaactttggctttggtggtgcaatcctattttatgtatgggttttatgacttagtgttgcagttggttg |
467 |
Q |
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| T |
16401392 |
gactcaggaaggctattttgatcttcaacttcaactttggctttggtggcgcaatcctattttatgtatgggttttatgacttagtgttgcagttggttg |
16401293 |
T |
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| Q |
468 |
gtgttttgttcagtgttttgattttgtaatgaactttttgta |
509 |
Q |
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| T |
16401292 |
gtgttttgttcagtgttttgattttgtaatgaactttttgta |
16401251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 16394328 - 16394246
Alignment:
| Q |
243 |
agttagagaaagcttcttattgcatcaaatgcttctttttggagaacgtgatgggtattcaatggtaacttccctgcataatg |
325 |
Q |
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| T |
16394328 |
agttagagaaagcttcttgctacatcaaatgcttatttttgaagaacaggatcagtattcagtggtagctttcctccataatg |
16394246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 724
Target Start/End: Original strand, 15456316 - 15456384
Alignment:
| Q |
655 |
ttgaaggtagaaagtaggattgttcttgttgttgatagagaagatcctacaaatttttatataggatcct |
724 |
Q |
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| T |
15456316 |
ttgaagggaggaagtagaattgttcttgctgtggatagagatgaccctacaaa-ttttatacaggatcct |
15456384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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