View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_10 (Length: 412)
Name: NF9288_low_10
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_10 |
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| [»] scaffold0819 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3586836 - 3586693
Alignment:
| Q |
16 |
cagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgcgggaatagttaagataagcatgtagaaa |
115 |
Q |
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| T |
3586836 |
cagcagctaggttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaa-agttaagataaacatgtagaaa |
3586738 |
T |
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| Q |
116 |
atgcaggaacaattaagaagaataagcatgtcccgcgtaaataaa |
160 |
Q |
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| T |
3586737 |
atgcgggaacagttaagaagaataagcatgtcccgcctaaataaa |
3586693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 9789629 - 9789750
Alignment:
| Q |
16 |
cagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgcgggaatagttaagataagcatgtagaaa |
115 |
Q |
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| T |
9789629 |
cagcagctaggttgaagatatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaacaattaagataagcatgtagaaa |
9789728 |
T |
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| Q |
116 |
atgcaggaacaattaagaagaa |
137 |
Q |
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| T |
9789729 |
atgcgggaacagttaagaagaa |
9789750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 44504690 - 44504580
Alignment:
| Q |
16 |
cagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctataaacaaataaaaaatgcgggaatagttaagataagcatgtagaaa |
115 |
Q |
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| T |
44504690 |
cagcagctaagttgaagagatgtgggaacggttaagaagaataacttatatatataggcaaataaaaaatgcgggaacagttgagataaacatgtagaaa |
44504591 |
T |
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| Q |
116 |
atgcaggaaca |
126 |
Q |
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| T |
44504590 |
atgcgggaaca |
44504580 |
T |
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Target: scaffold0819 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0819
Description:
Target: scaffold0819; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 378
Target Start/End: Complemental strand, 4752 - 4633
Alignment:
| Q |
260 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
358 |
Q |
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| T |
4752 |
aactactacatctgcaaatctgcaaattgttaattgtacaagtgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
4653 |
T |
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| Q |
359 |
gtagttaatacgaacagaaa |
378 |
Q |
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| T |
4652 |
gtagttactacgaacagaaa |
4633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 10775300 - 10775419
Alignment:
| Q |
260 |
aactactatatctgcaac-ctgcaaattattaattgtgcaagaaattgtttcatgacatgctagtagttagaatacaaagtatatcatgccaaactttca |
358 |
Q |
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|||||||| |||||||| || |||||| |||||||| ||| |||||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| |
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| T |
10775300 |
aactactacatctgcaaatcttcaaattgttaattgtacaactgattgtttcatgagatgctaggagttagaatataaagtatatcatgccaaagtttca |
10775399 |
T |
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| Q |
359 |
gtagttaatacgaacagaaa |
378 |
Q |
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| T |
10775400 |
gtagttactacgaacagaaa |
10775419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 31678441 - 31678365
Alignment:
| Q |
82 |
aaatgcgggaatagttaagataagcatgtagaaaatgcaggaacaattaagaagaataagcatgtcccgcgtaaata |
158 |
Q |
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||||||||||| | |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
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| T |
31678441 |
aaatgcgggaacaattaagataagcatgtagaaaatgcgggaacagttaagaagcataagcatgtcccgcgtaaata |
31678365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 31678568 - 31678513
Alignment:
| Q |
16 |
cagcagctaggttgaagagatgtgggaacggttaagaaaaataacttatatctata |
71 |
Q |
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| T |
31678568 |
cagcagctaggttgaaaagatgtgggaacggttaagaagaataacttatatatata |
31678513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 31678447 - 31678484
Alignment:
| Q |
121 |
ggaacaattaagaagaataagcatgtcccgcgtaaata |
158 |
Q |
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| T |
31678447 |
ggaacagttaagaagcataagcatgtcccgcgtaaata |
31678484 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 21856013 - 21856050
Alignment:
| Q |
202 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
239 |
Q |
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| T |
21856013 |
aaggtaagggcattattccgtacaatcatgtaggtcat |
21856050 |
T |
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