View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_11 (Length: 405)
Name: NF9288_low_11
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 28328140 - 28328522
Alignment:
| Q |
7 |
ttggtgtttacgtgtgagtatcgatgcttaacattttaatgcaaaatattcaatatgtatagcaaactcgcaatcactgtaatgaccattcataattatt |
106 |
Q |
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| T |
28328140 |
ttggtgtttacgtgtgagtatcgaagcttaacattttaatgcaaaatattcaatatgtatagcaaactcgcaatcactgtaatgaccattcataattatt |
28328239 |
T |
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| Q |
107 |
tgactcctaaaccttctcgcttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcnnnnnnncatgatatttatggtcaaat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28328240 |
tgactcctaaaccttctcgcttgtcattaatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaaaaacatgatatttatggtcaaat |
28328339 |
T |
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| Q |
207 |
ttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaatagagtagttggcgtattatacaaa |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28328340 |
ttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaattggattttcaatcaatagagtagttggcgtattatacaaa |
28328439 |
T |
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| Q |
307 |
tttgcaaaataaatgttttatccattcaagttgccaagttagttttacacgttgttagcagtgacctcaattctccttttcct |
389 |
Q |
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| T |
28328440 |
tttgcaaaataaatgttttatccattcaagttgctaagttagttttacacgttcttagcagtgacctcaattctccttttcct |
28328522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 32 - 389
Target Start/End: Original strand, 28332232 - 28332586
Alignment:
| Q |
32 |
gcttaacattttaatgcaaaatattcaatatgtatagcaaactcgcaatcactgtaatgaccattcataattatttgactcctaaaccttctcgcttgtc |
131 |
Q |
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| T |
28332232 |
gcttaacattttaatgcaaaatattcagtatgcataggaaactcgctatcactgtaattaccattcataattatttgactcctaaaccttctcacttgtc |
28332331 |
T |
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| Q |
132 |
attaatttgtgcatctgggtaaactttagaacattcaaatttttcatcnnnnnnncatgatatttatggtcaaatttgtatcatagcgtattatgcggaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| |
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| T |
28332332 |
attaatttgtgcatctgggtaaactttagaacattcaaatttttcatcaaaa---catgatatttatggtaaaatttgtatcatggcgtaatatgcggaa |
28332428 |
T |
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| Q |
232 |
atttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaatagagtagttggcgtattatacaaatttgcaaaataaatgttttatccat |
331 |
Q |
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| T |
28332429 |
atttaagttatagtattttcctcagtaacttaaattggattttcaatcaatagagtagttggcgttttatacaaatttgcaaaatatatgttttatccat |
28332528 |
T |
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| Q |
332 |
tcaagttgccaagttagttttacacgttgttagcagtgacctcaattctccttttcct |
389 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28332529 |
tcaagttgctaagttagttttacacgttcctagcagtgacctcaattctccttttcct |
28332586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 21160189 - 21160110
Alignment:
| Q |
203 |
aaatttgtatcatagcgtattatgcggaaatttaagttatagtattttcgtcagtaacttaaaatggattttcaatcaata |
283 |
Q |
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| T |
21160189 |
aaatttgtatcataacgtattatgctgaaatttatggttta-tattttcctcagtaactcaaagtggactttcaatcaata |
21160110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 21157894 - 21157833
Alignment:
| Q |
60 |
tatgtatagcaaactcgcaatcactgtaatgaccattcataattatttgactcctaaacctt |
121 |
Q |
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| T |
21157894 |
tatggataggaaaccctcaatcactgttatgagctttcataattatttgactcctaaacctt |
21157833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 1638855 - 1638915
Alignment:
| Q |
60 |
tatgtatagcaaactcgcaatcactgtaatgaccattcataattatttgactcctaaacctt |
121 |
Q |
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|||| ||||||||| | |||||||||| |||| | ||||||||||||||||| ||||||||| |
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| T |
1638855 |
tatggatagcaaaccctcaatcactgttatgagctttcataattatttgact-ctaaacctt |
1638915 |
T |
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