View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_12 (Length: 381)
Name: NF9288_low_12
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 68 - 365
Target Start/End: Complemental strand, 23600751 - 23600454
Alignment:
| Q |
68 |
atgcatcaaagatatctagcagccatggttctttggagtttgtggaaaaaccgcaagtcaaagctctgggataactcaccggcctacacagttaccctag |
167 |
Q |
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| T |
23600751 |
atgcatcaaagatatctagcagccatggttctttggagtttgtggaaaaaccgcaattcaaagctttgggataactcaccggcctacacagttaccctag |
23600652 |
T |
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| Q |
168 |
ctaaggacactctcaacaaatggagttgtatgcaaagagcaaagttggctatccaagctgccaatactcctcaagcttggagcaaaccccccatgggaac |
267 |
Q |
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| T |
23600651 |
ctaaggacactctcaacgaatggagttgtatgcaaagaacaaagttggctatccaacctgccaatactcctcaagcttggagcaaaccccccgtgggaac |
23600552 |
T |
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| Q |
268 |
aatcaaatggaatgttcacgttgcgtctttcaacaacaattcaattatggggtatggtatttgtttaagagattccttaggatcatttatgtttggca |
365 |
Q |
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| T |
23600551 |
aatcaaatggaatgttcacgttgcgtctttcaacaacaattcaattatggggtatggtatttgtttaagagattccttaggatcatttatgtttggca |
23600454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 45187612 - 45187655
Alignment:
| Q |
170 |
aaggacactctcaacaaatggagttgtatgcaaagagcaaagtt |
213 |
Q |
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| T |
45187612 |
aaggacactctcaacgaatggagttgtatgcaaagagcaaagtt |
45187655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 23600797 - 23600753
Alignment:
| Q |
9 |
tggtgttgacaactaatgatttcgcttccatggtttttgatttgt |
53 |
Q |
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| T |
23600797 |
tggtggtgacagctaatgatttcacttgcatggtttttgatttgt |
23600753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 365
Target Start/End: Complemental strand, 6353069 - 6352730
Alignment:
| Q |
21 |
ctaatgatttcgcttccatggtttttgatttgtttgacaggttgcccatgcatcaaagatatctagcagccatggttctttggagtttgtggaaaaaccg |
120 |
Q |
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||||||| || |||||||||||||| | | ||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6353069 |
ctaatgactttgcttccatggttttgg-tctgtttgacaggttacccacacatcaaagatatctagcagctatggttctttggagtttgtggaaaaaccg |
6352971 |
T |
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| Q |
121 |
caagtcaaagctctgggataac---------tcaccggcctacacagttaccctagctaaggacactctcaacaaatggagttgtatgcaaagagcaaag |
211 |
Q |
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| T |
6352970 |
caattcaaagctttgggataacacagataactcaccggcctacatagttacccgagatacg-------------aatggagttgtatgcaaagagcaaag |
6352884 |
T |
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| Q |
212 |
ttggctatccaagctgccaatactcctcaagcttggagcaaaccccccatgggaacaatcaaatggaatgttcacgttgcgtctttcaacaacaattcaa |
311 |
Q |
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||| |||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||| |||||| | | |||||||||||||||||||||| |
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| T |
6352883 |
ttgcctatccaagctgccaatattcctcatgcttggagcaaacctcctgcgggaacaatcaaatgcaatgttgatgccgcgtctttcaacaacaattcaa |
6352784 |
T |
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| Q |
312 |
ttatggggtatggtatttgtttaagagattccttaggatcatttatgtttggca |
365 |
Q |
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| T |
6352783 |
ttatggggtatggtatttgttttcgagattcctcaggatcatttatgtttggca |
6352730 |
T |
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