View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288_low_15 (Length: 370)
Name: NF9288_low_15
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 6538961 - 6538609
Alignment:
| Q |
1 |
tagtgaaagattagtgaagacttgaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgcggctcatgtcatgagtgtaagtcataac |
100 |
Q |
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| T |
6538961 |
tagtgacagattagtgaagacttcaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgtggctcatgtcatgagtgtaagtcataac |
6538862 |
T |
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| Q |
101 |
tcataacatatacttcctccgtaataaaaaaggtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttnnnnnnntggtcactt |
200 |
Q |
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| T |
6538861 |
tcataacatatacttcctccgtaataaaaaaagtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttaaaaaaatggtcactt |
6538762 |
T |
|
| Q |
201 |
acagtttacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagtagcagag |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6538761 |
acag-atacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagtagcagag |
6538663 |
T |
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| Q |
301 |
taattgattggtgatagatgcatgaagttttacatagagagaaagttgttttgt |
354 |
Q |
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| T |
6538662 |
taattgattggtgatagatgcatgaagttgtacatagagagaaagttgttttgt |
6538609 |
T |
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