View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_2 (Length: 597)

Name: NF9288_low_2
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_2
NF9288_low_2
[»] chr7 (10 HSPs)
chr7 (247-486)||(5714735-5714975)
chr7 (34-147)||(11673603-11673716)
chr7 (29-124)||(39426629-39426724)
chr7 (60-212)||(3850918-3851070)
chr7 (428-518)||(45613982-45614072)
chr7 (444-509)||(24527482-24527547)
chr7 (411-518)||(21326978-21327084)
chr7 (411-518)||(28517427-28517533)
chr7 (453-518)||(4501161-4501226)
chr7 (411-508)||(45003047-45003143)
[»] chr1 (9 HSPs)
chr1 (29-212)||(1968416-1968599)
chr1 (29-212)||(1953335-1953517)
chr1 (30-100)||(47580079-47580148)
chr1 (410-509)||(30688417-30688515)
chr1 (411-509)||(5453956-5454053)
chr1 (411-491)||(19035340-19035419)
chr1 (411-494)||(31737486-31737568)
chr1 (411-491)||(22346756-22346835)
chr1 (411-509)||(28493480-28493577)
[»] chr6 (6 HSPs)
chr6 (28-212)||(6950058-6950242)
chr6 (27-152)||(19698238-19698363)
chr6 (411-518)||(17249445-17249551)
chr6 (416-518)||(3137387-3137488)
chr6 (454-518)||(959484-959548)
chr6 (458-494)||(34554440-34554476)
[»] chr8 (9 HSPs)
chr8 (30-212)||(4327234-4327414)
chr8 (30-146)||(21185678-21185794)
chr8 (30-152)||(1789297-1789419)
chr8 (398-518)||(38815142-38815261)
chr8 (411-494)||(18804474-18804556)
chr8 (399-472)||(12751032-12751104)
chr8 (444-510)||(39434560-39434626)
chr8 (464-509)||(6618198-6618243)
chr8 (410-507)||(24320197-24320293)
[»] chr3 (11 HSPs)
chr3 (29-212)||(11634542-11634725)
chr3 (30-151)||(42258194-42258314)
chr3 (29-151)||(42254072-42254195)
chr3 (48-172)||(11641110-11641234)
chr3 (29-151)||(19930552-19930664)
chr3 (27-76)||(19935631-19935680)
chr3 (410-494)||(39583393-39583476)
chr3 (411-518)||(26772619-26772725)
chr3 (411-518)||(53785570-53785676)
chr3 (112-151)||(19935593-19935632)
chr3 (411-518)||(32546656-32546762)
[»] chr2 (8 HSPs)
chr2 (29-150)||(2590085-2590206)
chr2 (30-135)||(34564342-34564447)
chr2 (30-152)||(18739504-18739626)
chr2 (399-492)||(30602338-30602430)
chr2 (398-469)||(10587144-10587214)
chr2 (29-66)||(35969734-35969771)
chr2 (401-488)||(41702123-41702209)
chr2 (428-481)||(20143122-20143175)
[»] scaffold0014 (2 HSPs)
scaffold0014 (29-152)||(86621-86744)
scaffold0014 (30-121)||(82233-82314)
[»] chr4 (9 HSPs)
chr4 (397-494)||(26521336-26521432)
chr4 (413-518)||(39001260-39001364)
chr4 (428-494)||(47585172-47585238)
chr4 (428-494)||(50464460-50464526)
chr4 (446-494)||(50463107-50463155)
chr4 (398-489)||(23604938-23605028)
chr4 (411-489)||(40392723-40392800)
chr4 (411-509)||(53619447-53619544)
chr4 (465-518)||(34107836-34107889)
[»] scaffold0009 (1 HSPs)
scaffold0009 (411-518)||(102967-103073)
[»] chr5 (1 HSPs)
chr5 (428-494)||(23092696-23092762)
[»] scaffold0470 (1 HSPs)
scaffold0470 (464-509)||(7516-7561)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 247 - 486
Target Start/End: Original strand, 5714735 - 5714975
Alignment:
Q  247 ccactcatgtttcttcttttgtggggttatgtttggtttttaattctagtttagttataaaactagtgtgtaagaaccttcctaatcctatctgtacatg 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  5714735 ccactcatgtttcttcttttgtggggttatgtttggtttttaattctagtttggttataaaactattgtgtaagaaccttcctaatcctatctgtacatg 5714834  T
Q  347 tgttgt-tattaagtgcctctttggattgagagtttgctagattatttgttaatatatatcgaagattacttacacatgaattagaaggcaaacagaaaa 445  Q
    |||||| ||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||    
T  5714835 tgttgtatattaagtgcctccttggattgagagtttgatatattatttgttaatatacatcgaagattacttacatatgaattagaaggcatgcagaaaa 5714934  T
Q  446 caagctacgctgctaggcctttttggatgacaaaacaaatc 486  Q
     | |||||| |||||||  ||||| ||||||||||| ||||    
T  5714935 taggctacgttgctaggtttttttagatgacaaaaccaatc 5714975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 11673603 - 11673716
Alignment:
Q  34 gtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagccttattt 133  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  11673603 gtatttttgagttgatattatatttcaaaagttattaaaatttgtttattatttgttgttgatttaaccatgtgatatttacttagtcaaagtcttattt 11673702  T
Q  134 gtcaaatttatttt 147  Q
    |||| | |||||||    
T  11673703 gtcacaattatttt 11673716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 39426724 - 39426629
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaa 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39426724 ttgttgtatttttaagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttaatcaaa 39426629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 3851070 - 3850918
Alignment:
Q  60 aaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcaaatttattttatatatagtttt 159  Q
    ||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||||||  || ||||    
T  3851070 aaaagttattaaatgttgttcattatttgttgttgatttaatcaagtgatatttacttagtcaaagtcttatttatcaaatttattttataattattttt 3850971  T
Q  160 gtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
    ||||   |||||||||||| || |||||||||| ||||||| |||| ||||||    
T  3850970 gtaattgttgatgcttgacggtatggtcaaaggcttaaatctcattccctatt 3850918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 518
Target Start/End: Complemental strand, 45614072 - 45613982
Alignment:
Q  428 tagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggatttaggaga 518  Q
    |||||||||| | || |||||||| ||| ||||| |||||| ||||| |||||| |||||||||||| | ||||| ||||||  |||||||    
T  45614072 tagaaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggaga 45613982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 509
Target Start/End: Original strand, 24527482 - 24527547
Alignment:
Q  444 aacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    |||||||| ||| |||||  |||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  24527482 aacaagctgcgccgctagatctttttggatgacaaaaccaatcctcgtgaatacaacattcatgga 24527547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 518
Target Start/End: Complemental strand, 21327084 - 21326978
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||| |||||| ||||| ||||||||| |||| |||||||| ||| | ||| |||||||||||| |||||  ||||||||| || | ||||| ||||||     
T  21327084 attatttacacttgaat-agaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaacattcatggac 21326986  T
Q  511 ttaggaga 518  Q
     |||||||    
T  21326985 ctaggaga 21326978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 518
Target Start/End: Complemental strand, 28517533 - 28517427
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    ||||||||||||||||| || ||||| || |  ||||||||  |  ||||| | |||||||||| |||||| |||||||||||| | ||||| ||||||     
T  28517533 attacttacacatgaat-aggaggcagacgggcaacaagctgtgtcgctagacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggac 28517435  T
Q  511 ttaggaga 518  Q
    ||||||||    
T  28517434 ttaggaga 28517427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 518
Target Start/End: Original strand, 4501161 - 4501226
Alignment:
Q  453 cgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggatttaggaga 518  Q
    ||||||||| ||||||| ||||||||| | |||||||||||| | ||||| |||| || |||||||    
T  4501161 cgctgctagacctttttagatgacaaagctaatcctcgtaaacacaacattcatgaatctaggaga 4501226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 508
Target Start/End: Complemental strand, 45003143 - 45003047
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgg 508  Q
    ||||||||||||||||| || |||||| | || || ||||| ||| ||||| |||||||||||| |||||  |||| ||||||| | ||||| |||||    
T  45003143 attacttacacatgaat-aggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatcttcgtaaacacaacattcatgg 45003047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 1968416 - 1968599
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1968416 ttgttgtatttttaagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 1968515  T
Q  129 tatttgtcaaatttattttatatatagttttgtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  1968516 tatttatcaaatttattttatatttagttttgtaacaattgatgcttcacagtttggtcaaaggcttaaatcacatttcctatt 1968599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 1953335 - 1953517
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  1953335 ttgttgtatttttaagttgatattatattttaaaagttattaaaa-ttgttcattattttttgttgatttaaccatgtgatatttactaagtcaaagtct 1953433  T
Q  129 tatttgtcaaatttattttatatatagttttgtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
     |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  1953434 catttgtcaaatttattatatatttagttttgtaacaattgatgcttcacagtttggtcaaaggcttaaatcacatttcctatt 1953517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 47580079 - 47580148
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaa 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||  ||| |||||||||||||||    
T  47580079 tgttttatttttaagttgatattatatttcaaaagttattaaaaattgtttgtta-tttttgttgatttaa 47580148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 509
Target Start/End: Original strand, 30688417 - 30688515
Alignment:
Q  410 gattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    ||||| |||||||||||| ||| ||||| | |  |||||||| ||| ||||||||||||||||| ||||||| |||||||||||| | ||||| ||||||    
T  30688417 gattaattacacatgaat-agatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatgga 30688515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 5453956 - 5454053
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    ||||||||||||||||| || |||||| | |  |||||||| ||| ||||| ||||||||||||||||||| |||||| ||||| | ||||| ||||||    
T  5453956 attacttacacatgaat-aggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatccttgtaaacacaacattcatgga 5454053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 491
Target Start/End: Original strand, 19035340 - 19035419
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgt 491  Q
    |||| |||||| ||||| ||||||||| | || |||||||| ||| ||||| ||||||||||||||||||| |||||||||    
T  19035340 attatttacacttgaat-agaaggcaatcggacaacaagctgcgccgctagacctttttggatgacaaaaccaatcctcgt 19035419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 494
Target Start/End: Complemental strand, 31737568 - 31737486
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||| |||||| ||||| |||||||||||||| |||||||| ||| || | ||||||||||||| |||||  ||||||||||||    
T  31737568 attatttacacttgaat-agaaggcaaacagacaacaagctgcgccgccaagcctttttggatggcaaaatcaatcctcgtaaa 31737486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 491
Target Start/End: Original strand, 22346756 - 22346835
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgt 491  Q
    |||| |||||| ||||| ||||||||| | || |||||||| ||| ||||| |||||||||||| |||||| |||||||||    
T  22346756 attatttacacttgaat-agaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatcctcgt 22346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 509
Target Start/End: Complemental strand, 28493577 - 28493480
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    |||| |||||| ||||| ||||| ||||| || ||||| || ||| ||||| |||||||||||| |||||  ||||||||| || ||||||| ||||||    
T  28493577 attatttacacttgaat-agaagacaaacggacaacaaactgcgccgctagacctttttggatggcaaaatcaatcctcgtgaacataacattcatgga 28493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 8e-81; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 6950242 - 6950058
Alignment:
Q  28 tttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcc 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6950242 tttgctgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcc 6950143  T
Q  128 ttatttgtcaaatttattttatatatagttttgtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||| ||| |||| ||||||||||    
T  6950142 ttatttgtcaaatttattttatatttagttttgtatcaattgatgcttaaccgtttggtcaaaggcttacatcagatttcctatt 6950058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 19698363 - 19698238
Alignment:
Q  27 ttttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagc 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  19698363 ttttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgtttattatttgttgttgatttaaccatgttatatttacttagtcaaagc 19698264  T
Q  127 cttatttgtcaaatttattttatata 152  Q
    ||||||||||| | ||||||| ||||    
T  19698263 cttatttgtcacaattattttttata 19698238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 518
Target Start/End: Complemental strand, 17249551 - 17249445
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||||||| |||||||| || |||||| | |  |||||||| ||| ||||| |||||||||||| |||||| |||||||||||| | ||||| |||| |     
T  17249551 attacttatacatgaat-aggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatgaac 17249453  T
Q  511 ttaggaga 518  Q
    ||||||||    
T  17249452 ttaggaga 17249445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 518
Target Start/End: Complemental strand, 3137488 - 3137387
Alignment:
Q  416 ttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggatttagg 515  Q
    ||||||||||||  |||||||||| |  |||||| | | |||||| ||||||||||||| |||||| |||||||||||| | ||||| ||||||  ||||    
T  3137488 ttacacatgaatg-gaaggcaaacgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctagg 3137390  T
Q  516 aga 518  Q
    |||    
T  3137389 aga 3137387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 518
Target Start/End: Original strand, 959484 - 959548
Alignment:
Q  454 gctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggatttaggaga 518  Q
    |||| ||||||||||| ||||||||||  |||||||||||| | ||||| ||||||  |||||||    
T  959484 gctgttaggcctttttagatgacaaaatcaatcctcgtaaacacaacattcatggacctaggaga 959548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 494
Target Start/End: Complemental strand, 34554476 - 34554440
Alignment:
Q  458 ctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34554476 ctaggcctttttggatgacaaaatcaatcctcgtaaa 34554440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 5e-70; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 4327414 - 4327234
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  4327414 tgttgtatttttaagttgatattatatttcagaggttattaaaagttgttcattattttt-gttgatttaaccatgtgatatttacttagtcaaaacctt 4327316  T
Q  130 atttgtcaaatttattttatatatagttttgtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||    
T  4327315 atttgccaaatttattttatatttagttttgtaacaattgatgtttgaca-tttggtcaaaggcttaaatcacatttcctatt 4327234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 21185794 - 21185678
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  21185794 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattatttattgttgatttaaccatgtgatatttacttagtcaaaacctt 21185695  T
Q  130 atttgtcaaatttattt 146  Q
    |||||||| ||||||||    
T  21185694 atttgtcatatttattt 21185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 1789419 - 1789297
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  1789419 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgtttattgtttgttgttgatttaaccatgtgatatttacttagtcaaagcctt 1789320  T
Q  130 atttgtcaaatttattttatata 152  Q
    |||||||| ||||||||| ||||    
T  1789319 atttgtcacatttattttttata 1789297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 518
Target Start/End: Original strand, 38815142 - 38815261
Alignment:
Q  398 atatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatat 497  Q
    ||||||||| | |||| ||||||||||||| ||||||||| | |  |||||||| ||| |||| |||||||||||||  ||||| |||||||||||| |     
T  38815142 atatatatcaaggattgcttacacatgaat-agaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacac 38815240  T
Q  498 aacatgcatggatttaggaga 518  Q
    ||||| ||||||  |||||||    
T  38815241 aacattcatggacctaggaga 38815261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 18804474 - 18804556
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||| |||||| ||||| ||||||||| |||  |||||||| ||| ||||| |||||||||||| |||||| ||||||||||||    
T  18804474 attatttacacttgaat-agaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 18804556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 472
Target Start/End: Complemental strand, 12751104 - 12751032
Alignment:
Q  399 tatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttgga 472  Q
    |||||||| | ||||| |||||||| ||| |||| |||||| || |||||||| ||||||||||||||||||||    
T  12751104 tatatatcaatgattaattacacataaat-agaaagcaaactgacaacaagctgcgctgctaggcctttttgga 12751032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 510
Target Start/End: Original strand, 39434560 - 39434626
Alignment:
Q  444 aacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||||||| ||| ||||| |||||||||||| |||||  |||||||||||| | ||||| |||||||    
T  39434560 aacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggat 39434626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 509
Target Start/End: Original strand, 6618198 - 6618243
Alignment:
Q  464 ctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    |||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  6618198 ctttttggatgacaaaaccaatactcgtaaacataacattcatgga 6618243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 507
Target Start/End: Original strand, 24320197 - 24320293
Alignment:
Q  410 gattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatg 507  Q
    ||||| ||||||| |||| ||||| |||||||  |||||||| | ||||||| |||||||||||  |||||  |||||||||||| | ||||| ||||    
T  24320197 gattaattacacacgaat-agaagacaaacaggcaacaagctgcactgctagacctttttggatatcaaaatcaatcctcgtaaacacaacattcatg 24320293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 7e-66; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 11634725 - 11634542
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||     
T  11634725 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattatttgttgttgatttaatcatgtgatatttacttagtcaaagccc 11634626  T
Q  129 tatttgtcaaatttattttatatatagttttgtaacaattgatgcttgacagtttggtcaaaggattaaatcacatttcctatt 212  Q
    ||||| ||||||||||| ||||| || |||| |||| |||||| |||||| ||||||||||||| ||||||| |||| ||||||    
T  11634625 tatttatcaaatttattatatatttatttttctaactattgatacttgacggtttggtcaaaggcttaaatctcattccctatt 11634542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 42258314 - 42258194
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  42258314 tgttgtatttttgagtt-atattacatttcaaaagttattaaaagttgttcattatttattgttaatttaaccatgtgatatttacctagtcaaagcctt 42258216  T
Q  130 atttgtcaaatttattttatat 151  Q
    |||| |||||||||||||||||    
T  42258215 atttatcaaatttattttatat 42258194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 42254195 - 42254072
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaa-gttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcc 127  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||  |||||||||||    
T  42254195 ttgttgtatttttgagttgatattatatttcaaaaagttattaaaagttgttcattatttattgtgaatttaaccatgtgatatttatctagtcaaagcc 42254096  T
Q  128 ttatttgtcaaatttattttatat 151  Q
    || ||| |||||||||||||||||    
T  42254095 ttctttatcaaatttattttatat 42254072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 48 - 172
Target Start/End: Complemental strand, 11641234 - 11641110
Alignment:
Q  48 atattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcaaatttatttt 147  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||| ||||||||||||||||||||    
T  11641234 atattatatttccaaagttattaaaagttgttcattatttgttgttgatttatcaatgtgatatttatttagtcaaagcgttatttgtcaaatttatttt 11641135  T
Q  148 atatatagttttgtaacaattgatg 172  Q
    |||  || ||||||||| |||||||    
T  11641134 ataattatttttgtaactattgatg 11641110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 19930664 - 19930552
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    ||||||||||||||||| |||||||||||          |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||    
T  19930664 ttgttgtatttttgagtagatattatatt----------ttaaaagttgttcattatttattgttaatttaaccatgtgatatttacctagtcatagcct 19930575  T
Q  129 tatttgtcaaatttattttatat 151  Q
     |||| |||||||||||||||||    
T  19930574 aatttatcaaatttattttatat 19930552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 19935680 - 19935631
Alignment:
Q  27 ttttgttgtatttttgagttgatattatatttcaaaagttattaaaagtt 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19935680 ttttgttgtatttttgagttgatattatatttcaaaagttattaaaagtt 19935631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 39583476 - 39583393
Alignment:
Q  410 gattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||||||||||||||| |||| |||| |||| |||||| | ||| ||||| |||||||||||| |||||  ||||||||||||    
T  39583476 gattacttacacatgaat-agaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaa 39583393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 518
Target Start/End: Original strand, 26772619 - 26772725
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    ||||||||||||||||| || |||||| | |  |||||||| ||| ||||| |||||||||||| |||||  |||||||||||| | ||||| ||||||     
T  26772619 attacttacacatgaat-aggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggac 26772717  T
Q  511 ttaggaga 518  Q
     |||||||    
T  26772718 ctaggaga 26772725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 411 - 518
Target Start/End: Original strand, 53785570 - 53785676
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||| |||||| ||||| ||||||||| | |  |||||||||||| ||| | |||| ||||||| |||||| |||||||||||| ||||||| ||||||     
T  53785570 attatttacacttgaat-agaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatcctcgtaaacataacattcatggac 53785668  T
Q  511 ttaggaga 518  Q
     |||||||    
T  53785669 ctaggaga 53785676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 19935632 - 19935593
Alignment:
Q  112 ttacttagtcaaagccttatttgtcaaatttattttatat 151  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  19935632 ttacctagtcaaagccttatttatcaaatttattttatat 19935593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 518
Target Start/End: Original strand, 32546656 - 32546762
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||| |||||| ||||| ||||||||| | |  |||||||| ||| ||||| |||||||||||| |||||| ||||||||| || | ||||| ||||||     
T  32546656 attatttacacttgaat-agaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggac 32546754  T
Q  511 ttaggaga 518  Q
     |||||||    
T  32546755 ctaggaga 32546762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 2590085 - 2590206
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||    
T  2590085 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattacttgttgttgatttaaccatgtgatatttacttagtcaaaacct 2590184  T
Q  129 tatttgtcaaatttattttata 150  Q
    ||||||||| | ||||||||||    
T  2590185 tatttgtcacaattattttata 2590206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 34564342 - 34564447
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34564342 tgttgtatttttgagttgatattatattttaaaagttattaaaagttgtttattatttgttgttgatttaaccatgtgatatttacttagtcaaagcctt 34564441  T
Q  130 atttgt 135  Q
    ||||||    
T  34564442 atttgt 34564447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 18739626 - 18739504
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcctt 129  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  18739626 tgttgtagttttgagttgatattatattttaaaagttattaaaagttgtttattatttgttgttgatttaaccatgtgatatttacttagtcaaaacctt 18739527  T
Q  130 atttgtcaaatttattttatata 152  Q
    |||||||| | ||||||| ||||    
T  18739526 atttgtcacaattattttttata 18739504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 492
Target Start/End: Original strand, 30602338 - 30602430
Alignment:
Q  399 tatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgta 492  Q
    |||||||| | ||||| |||||||||||| ||||||||  | |  |||||||| |||||||||||||||||||||| |||||| ||||||||||    
T  30602338 tatatatcaaggattaattacacatgaat-agaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatcctcgta 30602430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 469
Target Start/End: Complemental strand, 10587214 - 10587144
Alignment:
Q  398 atatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggccttttt 469  Q
    ||||||||| | |||||||||||||||||| ||||||||||| |  |||||||||||| ||||| |||||||    
T  10587214 atatatatcaaggattacttacacatgaat-agaaggcaaacgggcaacaagctacgccgctagaccttttt 10587144  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 35969771 - 35969734
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagtt 66  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  35969771 ttgttgtatttttcagttgatattatatttcaaaagtt 35969734  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 488
Target Start/End: Original strand, 41702123 - 41702209
Alignment:
Q  401 tatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcct 488  Q
    |||||| | |||||||||||||||||| |||||||||   |  |||||||| |||  ||||||||||||||||| |||||| ||||||    
T  41702123 tatatcaaggattacttacacatgaat-agaaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaatcct 41702209  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 20143175 - 20143122
Alignment:
Q  428 tagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaac 481  Q
    ||||||||||||||| |||||| | ||| ||||| |||||||||||| ||||||    
T  20143175 tagaaggcaaacagacaacaagttgcgccgctagacctttttggatggcaaaac 20143122  T

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Target: scaffold0014 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 86621 - 86744
Alignment:
Q  29 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtcaaagcct 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  86621 ttgttgtatttttgagttgatattatatttcaaaagttattaaaagttgtttattatttgttagtgatttaaccatgtgatatttacttagtcaaagcct 86720  T
Q  129 tatttgtcaaatttattttatata 152  Q
    || |||||| | ||||||| ||||    
T  86721 tacttgtcacaattattttttata 86744  T

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Target: scaffold0014; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 82233 - 82314
Alignment:
Q  30 tgttgtatttttgagttgatattatatttcaaaagttattaaaagttgttcattattttttgttgatttaaccatgtgatatttacttagtc 121  Q
    |||||||||||||||||||||||||||||||||||||          ||| ||||||| ||||||||||||| |||||||||||||||||||    
T  82233 tgttgtatttttgagttgatattatatttcaaaagtt----------gtttattatttgttgttgatttaacgatgtgatatttacttagtc 82314  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 397 - 494
Target Start/End: Original strand, 26521336 - 26521432
Alignment:
Q  397 aatatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||||||| | ||||||||||||||| || ||||||||| | || || |||||  || ||||  ||||||||||||||||||| ||||||||||||    
T  26521336 aatatatatcaaggattacttacacatggat-agaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaa 26521432  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 518
Target Start/End: Original strand, 39001260 - 39001364
Alignment:
Q  413 tacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggattt 512  Q
    ||||||||||||||| || |||||| | |  ||||| || ||| ||||| ||||||||||||||||||| |||||||||||| | ||||| ||||||  |    
T  39001260 tacttacacatgaat-aggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacct 39001358  T
Q  513 aggaga 518  Q
    ||||||    
T  39001359 aggaga 39001364  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 47585238 - 47585172
Alignment:
Q  428 tagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    ||||||||||||||| ||||| |||||| ||||  ||||||| ||||||||||| |||| |||||||    
T  47585238 tagaaggcaaacagacaacaaactacgccgctaaacctttttagatgacaaaaccaatcttcgtaaa 47585172  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 50464526 - 50464460
Alignment:
Q  428 tagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||||||| | || |||||||| ||| |||||| ||||||||||| ||||| |||||||||||||    
T  50464526 tagaaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaataaatcctcgtaaa 50464460  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 50463155 - 50463107
Alignment:
Q  446 caagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||| ||| |||||| ||||||||||| |||||||||||||||||||    
T  50463155 caagctgcgccgctaggtctttttggatggcaaaacaaatcctcgtaaa 50463107  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 489
Target Start/End: Original strand, 23604938 - 23605028
Alignment:
Q  398 atatatatcgaagattacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctc 489  Q
    ||||||||| | ||||| |||||||||||| ||||| ||| | || |||||| | ||| ||||| ||||||||||||||||||  |||||||    
T  23604938 atatatatcaatgattatttacacatgaat-agaagacaaccggacaacaagttgcgccgctagacctttttggatgacaaaatcaatcctc 23605028  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 489
Target Start/End: Complemental strand, 40392800 - 40392723
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctc 489  Q
    |||| |||||| ||||| ||||||||| | || |||||||| ||| ||||| |||||||||||| |||||| |||||||    
T  40392800 attatttacacttgaat-agaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaatcctc 40392723  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 53619447 - 53619544
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    ||||||||||||||||| || ||| ||  ||  |||||||| ||| ||||| |||||||||||| |||||| ||| |||||||| | ||||| ||||||    
T  53619447 attacttacacatgaat-aggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatgga 53619544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 34107889 - 34107836
Alignment:
Q  465 tttttggatgacaaaacaaatcctcgtaaatataacatgcatggatttaggaga 518  Q
    ||||||||||||||||| ||||||||| || | ||||| ||||||| |||||||    
T  34107889 tttttggatgacaaaaccaatcctcgtgaacacaacattcatggatctaggaga 34107836  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 518
Target Start/End: Original strand, 102967 - 103073
Alignment:
Q  411 attacttacacatgaattagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaatataacatgcatggat 510  Q
    |||| |||||| ||||| ||||||||| | |  |||||| | ||| ||||| |||||||||||| |||||| |||||||||||| | ||||| ||||||     
T  102967 attatttacacttgaat-agaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggac 103065  T
Q  511 ttaggaga 518  Q
     |||||||    
T  103066 ctaggaga 103073  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 494
Target Start/End: Original strand, 23092696 - 23092762
Alignment:
Q  428 tagaaggcaaacagaaaacaagctacgctgctaggcctttttggatgacaaaacaaatcctcgtaaa 494  Q
    |||||||||| |||| ||||| || || |||||| |||| |||||||||||||  ||||||||||||    
T  23092696 tagaaggcaagcagacaacaaactgcgttgctagaccttgttggatgacaaaatcaatcctcgtaaa 23092762  T

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Target: scaffold0470 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 509
Target Start/End: Original strand, 7516 - 7561
Alignment:
Q  464 ctttttggatgacaaaacaaatcctcgtaaatataacatgcatgga 509  Q
    |||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  7516 ctttttggatgacaaaaccaatactcgtaaacataacattcatgga 7561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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