View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288_low_21 (Length: 361)

Name: NF9288_low_21
Description: NF9288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288_low_21
NF9288_low_21
[»] chr1 (8 HSPs)
chr1 (11-346)||(30995759-30996094)
chr1 (247-345)||(47555819-47555917)
chr1 (290-337)||(50571280-50571327)
chr1 (291-346)||(47553934-47553990)
chr1 (240-339)||(37522950-37523049)
chr1 (290-339)||(7790682-7790731)
chr1 (301-346)||(44801592-44801637)
chr1 (298-346)||(32370064-32370112)
[»] chr5 (5 HSPs)
chr5 (275-345)||(14299311-14299381)
chr5 (248-317)||(27374353-27374422)
chr5 (292-339)||(9818732-9818779)
chr5 (292-339)||(38845441-38845488)
chr5 (240-302)||(43012683-43012745)
[»] chr6 (4 HSPs)
chr6 (240-336)||(6654133-6654229)
chr6 (240-339)||(765426-765525)
chr6 (292-339)||(4910906-4910953)
chr6 (240-332)||(26280551-26280643)
[»] chr7 (4 HSPs)
chr7 (240-339)||(41386855-41386954)
chr7 (279-312)||(40561825-40561858)
chr7 (275-327)||(35105139-35105191)
chr7 (275-339)||(40491559-40491623)
[»] chr3 (2 HSPs)
chr3 (290-339)||(25359614-25359663)
chr3 (242-309)||(41115432-41115499)
[»] chr8 (3 HSPs)
chr8 (292-336)||(44141093-44141137)
chr8 (290-339)||(36200172-36200221)
chr8 (170-229)||(10892954-10893014)
[»] chr4 (5 HSPs)
chr4 (292-336)||(50061671-50061715)
chr4 (285-339)||(14596680-14596734)
chr4 (250-340)||(18508675-18508765)
chr4 (294-336)||(41370053-41370095)
chr4 (268-312)||(47514273-47514317)
[»] chr2 (2 HSPs)
chr2 (297-340)||(36256049-36256092)
chr2 (292-340)||(10644601-10644649)
[»] scaffold0005 (1 HSPs)
scaffold0005 (285-339)||(220644-220698)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 30995759 - 30996094
Alignment:
Q  11 caaagggagaaataagactccaacaaccaaaatatgcattgaaatatccccactttttaactctatatcgctcccgtttgggagttactacatgatacac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30995759 caaagggagaaataagactccaacaaccaaaatatgcattgaaatatccccactttttaactctatatcgctcccgtttgggagttactacatgatacac 30995858  T
Q  111 aacttacatattataacataaagagatcatgtcatttgtgttcaattttgttttaaactcatttttcctccttactccaacaattaaaccccaacaaatt 210  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30995859 aacttacatatgataacataaagagatcctgtcatttgtgttcaattttgttttaaactcatttttcctccttactccaacaattaaaccccaacaaatt 30995958  T
Q  211 tcgtcaaactcaaacaacaaataatgtgtattgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagt 310  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30995959 tcgtcaaactcaaacaacaaataatgtgtattgattataacatgtttgtttggtttcaagtagtattgatttttctttaagaattgattctacttgaagt 30996058  T
Q  311 tatgattagtagttttttattctagaattagttttt 346  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30996059 tatgattagtagttttttattatagaattagttttt 30996094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 47555819 - 47555917
Alignment:
Q  247 atgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaattagtttt 345  Q
    |||||||||||||| | ||| ||||||   ||||||| |||||| ||||||||||| |||||  ||| ||| ||||||||||||| |||||||||||||    
T  47555819 atgacatgtttgttcgctttcaagtagagatgattttgctttaaaaattgattctatttgaaactataatttgtagttttttattttagaattagtttt 47555917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 50571280 - 50571327
Alignment:
Q  290 agaattgattctacttgaagttatgattagtagttttttattctagaa 337  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  50571280 agaattgattctacttgaagttaggatttgtagttttttattctagaa 50571327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 346
Target Start/End: Original strand, 47553934 - 47553990
Alignment:
Q  291 gaattgattctacttgaagttatgattagtagtttt-ttattctagaattagttttt 346  Q
    |||||||||||| |||||| |||| || |||||||| ||||||||||||||||||||    
T  47553934 gaattgattctatttgaagctatgctttgtagtttttttattctagaattagttttt 47553990  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 37523049 - 37522950
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    ||||||||||||||||||| ||| | || ||||| ||||||||||  |   ||||||||||||||||||| ||  | | | |||||||||| ||||||||    
T  37523049 attgattatgacatgtttgattgctctggagtagaattgattttttctctcgaattgattctacttgaagctagaagttggagttttttatcctagaatt 37522950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 7790731 - 7790682
Alignment:
Q  290 agaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||||||||||||||||||||||||||| |||| |||  |||||| ||||    
T  7790731 agaattgattctacttgaagttatgatttgtagatttagattctataatt 7790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 44801592 - 44801637
Alignment:
Q  301 tacttgaagttatgattagtagttttttattctagaattagttttt 346  Q
    |||||||||||| |||| |||||||||||||||| ||||| |||||    
T  44801592 tacttgaagttaggatttgtagttttttattctaaaattaattttt 44801637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 32370112 - 32370064
Alignment:
Q  298 ttctacttgaagttatgattagtagttttttattctagaattagttttt 346  Q
    |||||||||||||||  ||| ||| |||||||||||||||||| |||||    
T  32370112 ttctacttgaagttagaatttgtaattttttattctagaattatttttt 32370064  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 14299311 - 14299381
Alignment:
Q  275 attgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaattagtttt 345  Q
    ||||||||| |||| | ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  14299311 attgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggtttt 14299381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 27374422 - 27374353
Alignment:
Q  248 tgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgatt 317  Q
    ||||||||||| ||| ||| |||||| ||| ||||| | |||||||||||||||||||||||||| ||||    
T  27374422 tgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatt 27374353  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 9818732 - 9818779
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaatt 9818779  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 38845441 - 38845488
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||||||||||||||||| || |||| ||||||||| |||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaatt 38845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 43012683 - 43012745
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattcta 302  Q
    ||||||| ||||||||||||||| |||  ||||| ||||||||| ||||  ||||||||||||    
T  43012683 attgattttgacatgtttgtttgatttagagtagaattgattttgctttctgaattgattcta 43012745  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 6654229 - 6654133
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctaga 336  Q
    |||||||||| |||||||| ||| | |  ||||| ||||||||||| || |||||| ||||||||||||| || |||| |||| |||| ||||||||    
T  6654229 attgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctaga 6654133  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 765525 - 765426
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    ||||||| |||| |||||| ||| ||| |||||| | || ||||   | ||||||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  765525 attgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaatt 765426  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 4910906 - 4910953
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaatt 4910953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 332
Target Start/End: Original strand, 26280551 - 26280643
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattc 332  Q
    ||||||| ||||||||||| ||| |||   |||| ||||||||| | | |||||||||||| |||||||| ||  ||| ||||||||| ||||    
T  26280551 attgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattc 26280643  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 339
Target Start/End: Complemental strand, 41386954 - 41386855
Alignment:
Q  240 attgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    ||||||| ||||||||||| ||| |||  ||||  ||||||||  | || |||||||||||||||||||| || |||| |||| |||| |||||||||||    
T  41386954 attgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaatt 41386855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 40561858 - 40561825
Alignment:
Q  279 atttttctttaagaattgattctacttgaagtta 312  Q
    ||||||||| ||||||||||||||||||||||||    
T  40561858 atttttcttcaagaattgattctacttgaagtta 40561825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 35105139 - 35105191
Alignment:
Q  275 attgatttttctttaagaattgattctacttgaagttatgattagtagttttt 327  Q
    ||||||||| |||  |||||||||||||||||||| ||| ||| |||||||||    
T  35105139 attgattttgcttgtagaattgattctacttgaagctataatttgtagttttt 35105191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 40491559 - 40491623
Alignment:
Q  275 attgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    ||||||||| | || |||||||| |||||||||||||| | || |||| |||| |||||||||||    
T  40491559 attgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaatt 40491623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 25359663 - 25359614
Alignment:
Q  290 agaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||||||||||||||||||||||  ||| |||||||||||||||| ||||    
T  25359663 agaattgattctacttgaagttagaatttgtagttttttattctataatt 25359614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 41115499 - 41115432
Alignment:
Q  242 tgattatgacatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaag 309  Q
    ||||| |||||||||||  || ||| |||||| ||||||||| |||  ||||||||||||||||||||    
T  41115499 tgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaag 41115432  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 44141137 - 44141093
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctaga 336  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctaga 44141093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 36200221 - 36200172
Alignment:
Q  290 agaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    ||||||||||| |||||||||||||||| || | |||| |||||||||||    
T  36200221 agaattgattcaacttgaagttatgatttgtcgattttgattctagaatt 36200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 10893014 - 10892954
Alignment:
Q  170 catttttcctccttactccaaca-attaaaccccaacaaatttcgtcaaactcaaacaaca 229  Q
    |||||| | ||| |||||||||| || |||| |||||||| ||||||||||||||||||||    
T  10893014 cattttccttccctactccaacacatcaaacaccaacaaaattcgtcaaactcaaacaaca 10892954  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 50061715 - 50061671
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctaga 336  Q
    ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctaga 50061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 14596680 - 14596734
Alignment:
Q  285 ctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||| |||||||||||||||||||| |||| || | ||||||| |||||||||||    
T  14596680 ctttcagaattgattctacttgaagctatgttttgcagtttttgattctagaatt 14596734  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 18508765 - 18508675
Alignment:
Q  250 acatgtttgtttggtttgaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattctagaatta 340  Q
    |||| |||| ||| ||| |||| |||||||||||   || |||||||||| |||||||| |||| |||  ||||||||||||| |||||||    
T  18508765 acatatttgattgtttttaagttgtattgattttgtcttcagaattgattttacttgaaattattatttatagttttttattcgagaatta 18508675  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 41370095 - 41370053
Alignment:
Q  294 ttgattctacttgaagttatgattagtagttttttattctaga 336  Q
    ||||||||||||||||||| ||||  |||||||||||||||||    
T  41370095 ttgattctacttgaagttaggatttatagttttttattctaga 41370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 47514317 - 47514273
Alignment:
Q  268 aagtagtattgatttttctttaagaattgattctacttgaagtta 312  Q
    |||||| |||||||||||||  |||||||||| ||||||||||||    
T  47514317 aagtagaattgatttttcttgtagaattgattttacttgaagtta 47514273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 36256092 - 36256049
Alignment:
Q  297 attctacttgaagttatgattagtagttttttattctagaatta 340  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||    
T  36256092 attctacttgaagttagaattcgtagttttttattctagaatta 36256049  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 10644601 - 10644649
Alignment:
Q  292 aattgattctacttgaagttatgattagtagttttttattctagaatta 340  Q
    |||| |||||||||||||||| |||| ||||||||| ||| ||||||||    
T  10644601 aatttattctacttgaagttaagatttgtagtttttcattatagaatta 10644649  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 220698 - 220644
Alignment:
Q  285 ctttaagaattgattctacttgaagttatgattagtagttttttattctagaatt 339  Q
    |||| |||||||||||||||||||| |||| || | ||||||| |||||||||||    
T  220698 ctttcagaattgattctacttgaagctatgttttgcagtttttgattctagaatt 220644  T

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